Analysis of interatomic Contacts of Structural Units in PDB entry:
5M38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M38 entry

There are 3 chains in PDB entry 5M38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2PRO 114
B
 VAL 3PRO 114
C
 LYS 1PRO 114
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5M38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 21Right-handed 310
Helix 2
AA2
A
22 36Right-handed alpha
Helix 3
AA3
A
52 74Right-handed alpha
Helix 4
AA4
A
78 80Right-handed 310
Helix 5
AA5
A
98 106Right-handed alpha
Helix 6
AA6
B
19 21Right-handed 310
Helix 7
AA7
B
22 37Right-handed alpha
Helix 8
AA8
B
52 74Right-handed alpha
Helix 9
AA9
B
78 80Right-handed 310
Helix 10
AB1
B
98 106Right-handed alpha
Helix 11
AB2
C
19 21Right-handed 310
Helix 12
AB3
C
22 36Right-handed alpha
Helix 13
AB4
C
52 75Right-handed alpha
Helix 14
AB5
C
78 80Right-handed 310
Helix 15
AB6
C
98 106Right-handed alpha
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There are 3 sheets in PDB entry 5M38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
107 111anti-parallel
Strand 3
A
41 46anti-parallel
Strand 4
A
82 88parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
107 112anti-parallel
Strand 3
B
41 46anti-parallel
Strand 4
B
82 86parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 6first strand
Strand 2
C
108 113anti-parallel
Strand 3
C
40 46anti-parallel
Strand 4
C
82 88parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il