Analysis of interatomic Contacts of Structural Units in PDB entry:
5M3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M3D entry

There are 4 chains in PDB entry 5M3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 113GLY 202
B
 GLY 112GLY 202
C
 VAL 114GLY 202
D
 VAL 114GLY 202
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5M3D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
115 137Right-handed alpha
Helix 2
AA2
A
140 155Right-handed alpha
Helix 3
AA3
A
160 171Right-handed alpha
Helix 4
AA4
A
172 175Right-handed 310
Helix 5
AA5
A
180 186Right-handed 310
Helix 6
AA6
A
189 200Right-handed alpha
Helix 7
AA7
B
115 137Right-handed alpha
Helix 8
AA8
B
140 155Right-handed alpha
Helix 9
AA9
B
160 171Right-handed alpha
Helix 10
AB1
B
172 175Right-handed 310
Helix 11
AB2
B
182 187Right-handed alpha
Helix 12
AB3
B
189 200Right-handed alpha
Helix 13
AB4
C
115 135Right-handed alpha
Helix 14
AB5
C
142 155Right-handed alpha
Helix 15
AB6
C
160 171Right-handed alpha
Helix 16
AB7
C
172 175Right-handed 310
Helix 17
AB8
C
181 186Right-handed 310
Helix 18
AB9
C
189 200Right-handed alpha
Helix 19
AC1
D
115 136Right-handed alpha
Helix 20
AC2
D
142 155Right-handed alpha
Helix 21
AC3
D
160 171Right-handed alpha
Helix 22
AC4
D
172 175Right-handed 310
Helix 23
AC5
D
181 186Right-handed 310
Helix 24
AC6
D
189 200Right-handed alpha
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There are no sheets in PDB entry 5M3D
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il