Analysis of interatomic Contacts of Structural Units in PDB entry:
5M3K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M3K entry

There are 6 chains in PDB entry 5M3K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	LEU 362
B	MET 3	ILE 146
C	ALA 3	ASN 87
C	THR 89	ASP 398
D	LYS 4	LEU 362
E	SER 2	SER 64

There are 88 helices in PDB entry 5M3K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	30	Right-handed alpha
Helix 2	AA2	A	33	40	Right-handed alpha
Helix 3	AA3	A	54	68	Right-handed alpha
Helix 4	AA4	A	91	101	Right-handed alpha
Helix 5	AA5	A	113	115	Right-handed 310
Helix 6	AA6	A	116	131	Right-handed alpha
Helix 7	AA7	A	155	159	Right-handed 310
Helix 8	AA8	A	206	213	Right-handed alpha
Helix 9	AA9	A	213	230	Right-handed alpha
Helix 10	AB1	A	232	236	Right-handed 310
Helix 11	AB2	A	246	257	Right-handed alpha
Helix 12	AB3	A	259	264	Right-handed alpha
Helix 13	AB4	A	265	267	Right-handed 310
Helix 14	AB5	A	268	272	Right-handed 310
Helix 15	AB6	A	277	289	Right-handed alpha
Helix 16	AB7	A	318	325	Right-handed alpha
Helix 17	AB8	A	328	333	Right-handed alpha
Helix 18	AB9	A	340	348	Right-handed alpha
Helix 19	AC1	B	16	21	Right-handed alpha
Helix 20	AC2	B	22	28	Right-handed alpha
Helix 21	AC3	B	75	79	Right-handed 310
Helix 22	AC4	B	111	115	Right-handed 310
Helix 23	AC5	C	25	41	Right-handed alpha
Helix 24	AC6	C	44	48	Right-handed 310
Helix 25	AC7	C	66	74	Right-handed alpha
Helix 26	AC8	C	86	88	Right-handed 310
Helix 27	AC9	C	89	104	Right-handed alpha
Helix 28	AD1	C	117	121	Right-handed 310
Helix 29	AD2	C	123	128	Right-handed alpha
Helix 30	AD3	C	129	131	Right-handed 310
Helix 31	AD4	C	133	141	Right-handed 310
Helix 32	AD5	C	143	159	Right-handed alpha
Helix 33	AD6	C	164	182	Right-handed alpha
Helix 34	AD7	C	195	201	Right-handed alpha
Helix 35	AD8	C	202	207	Right-handed 310
Helix 36	AD9	C	224	229	Right-handed 310
Helix 37	AE1	C	247	252	Right-handed 310
Helix 38	AE2	C	271	286	Right-handed alpha
Helix 39	AE3	C	288	292	Right-handed 310
Helix 40	AE4	C	302	311	Right-handed alpha
Helix 41	AE5	C	318	325	Right-handed alpha
Helix 42	AE6	C	340	345	Right-handed alpha
Helix 43	AE7	C	348	350	Right-handed 310
Helix 44	AE8	C	351	365	Right-handed alpha
Helix 45	AE9	D	22	30	Right-handed alpha
Helix 46	AF1	D	33	39	Right-handed alpha
Helix 47	AF2	D	54	68	Right-handed alpha
Helix 48	AF3	D	91	101	Right-handed alpha
Helix 49	AF4	D	113	115	Right-handed 310
Helix 50	AF5	D	116	131	Right-handed alpha
Helix 51	AF6	D	155	159	Right-handed 310
Helix 52	AF7	D	206	213	Right-handed alpha
Helix 53	AF8	D	213	230	Right-handed alpha
Helix 54	AF9	D	232	236	Right-handed 310
Helix 55	AG1	D	246	257	Right-handed alpha
Helix 56	AG2	D	259	264	Right-handed alpha
Helix 57	AG3	D	265	267	Right-handed 310
Helix 58	AG4	D	268	272	Right-handed 310
Helix 59	AG5	D	277	289	Right-handed alpha
Helix 60	AG6	D	318	325	Right-handed alpha
Helix 61	AG7	D	328	333	Right-handed alpha
Helix 62	AG8	D	340	348	Right-handed alpha
Helix 63	AG9	E	16	21	Right-handed alpha
Helix 64	AH1	E	22	28	Right-handed alpha
Helix 65	AH2	E	75	79	Right-handed 310
Helix 66	AH3	E	111	115	Right-handed 310
Helix 67	AH4	F	25	41	Right-handed alpha
Helix 68	AH5	F	44	48	Right-handed 310
Helix 69	AH6	F	66	74	Right-handed alpha
Helix 70	AH7	F	86	88	Right-handed 310
Helix 71	AH8	F	89	104	Right-handed alpha
Helix 72	AH9	F	117	121	Right-handed 310
Helix 73	AI1	F	123	128	Right-handed alpha
Helix 74	AI2	F	129	131	Right-handed 310
Helix 75	AI3	F	133	141	Right-handed 310
Helix 76	AI4	F	143	159	Right-handed alpha
Helix 77	AI5	F	164	182	Right-handed alpha
Helix 78	AI6	F	195	201	Right-handed alpha
Helix 79	AI7	F	202	207	Right-handed 310
Helix 80	AI8	F	224	229	Right-handed 310
Helix 81	AI9	F	247	252	Right-handed 310
Helix 82	AJ1	F	271	286	Right-handed alpha
Helix 83	AJ2	F	288	292	Right-handed 310
Helix 84	AJ3	F	302	311	Right-handed alpha
Helix 85	AJ4	F	318	325	Right-handed alpha
Helix 86	AJ5	F	340	345	Right-handed alpha
Helix 87	AJ6	F	348	350	Right-handed 310
Helix 88	AJ7	F	351	365	Right-handed alpha

There are 12 sheets in PDB entry 5M3K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	111	first strand
Strand 2	A	77	81	parallel
Strand 3	A	137	144	parallel
Strand 4	A	161	169	anti-parallel
Strand 5	A	7	14	anti-parallel
Strand 6	A	175	187	anti-parallel
Strand 7	A	305	315	anti-parallel
Strand 8	A	296	300	anti-parallel
Strand 9	A	238	241	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	18	21	anti-parallel
Strand 3	A	337	338	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	191	first strand
Strand 2	A	200	201	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	30	34	anti-parallel
Strand 3	B	56	60	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	73	first strand
Strand 2	B	89	96	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	137	144	parallel
Strand 5	B	120	128	anti-parallel
Strand 6	B	64	73	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	84	first strand
Strand 2	C	50	54	parallel
Strand 3	C	109	116	parallel
Strand 4	C	214	222	anti-parallel
Strand 5	C	6	13	anti-parallel
Strand 6	C	234	243	anti-parallel
Strand 7	C	389	396	anti-parallel
Strand 8	C	377	384	anti-parallel
Strand 9	C	294	297	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	111	first strand
Strand 2	D	77	81	parallel
Strand 3	D	137	144	parallel
Strand 4	D	161	169	anti-parallel
Strand 5	D	7	14	anti-parallel
Strand 6	D	175	187	anti-parallel
Strand 7	D	305	315	anti-parallel
Strand 8	D	296	300	anti-parallel
Strand 9	D	238	241	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	48	first strand
Strand 2	D	18	21	anti-parallel
Strand 3	D	337	338	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	190	191	first strand
Strand 2	D	200	201	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	41	first strand
Strand 2	E	30	34	anti-parallel
Strand 3	E	56	60	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	73	first strand
Strand 2	E	89	96	anti-parallel
Strand 3	E	101	107	anti-parallel
Strand 4	E	137	144	parallel
Strand 5	E	120	128	anti-parallel
Strand 6	E	64	73	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	84	first strand
Strand 2	F	50	54	parallel
Strand 3	F	109	116	parallel
Strand 4	F	214	222	anti-parallel
Strand 5	F	6	13	anti-parallel
Strand 6	F	234	243	anti-parallel
Strand 7	F	389	396	anti-parallel
Strand 8	F	377	384	anti-parallel
Strand 9	F	294	297	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M3K

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M3K