Analysis of interatomic Contacts of Structural Units in PDB entry:
5M3N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M3N entry

There is 1 chain in PDB entry 5M3N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 142HIS 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5M3N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
142 148Right-handed alpha
Helix 2
AA2
A
148 158Right-handed alpha
Helix 3
AA3
A
197 201Right-handed 310
Helix 4
AA4
A
247 251Right-handed 310
Helix 5
AA5
A
335 343Right-handed alpha
Helix 6
AA6
A
370 381Right-handed alpha
Helix 7
AA7
A
400 406Right-handed alpha
Helix 8
AA8
A
423 434Right-handed alpha
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There are 5 sheets in PDB entry 5M3N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 170first strand
Strand 2
A
175 188anti-parallel
Strand 3
A
192 195anti-parallel
Strand 4
A
229 233anti-parallel
Strand 5
A
215 224anti-parallel
Strand 6
A
205 209anti-parallel
Strand 7
A
161 170anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 274first strand
Strand 2
A
256 259anti-parallel
Strand 3
A
309 311anti-parallel
Strand 4
A
317 326anti-parallel
Strand 5
A
329 334anti-parallel
Strand 6
A
295 297anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
455 457anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 368first strand
Strand 2
A
391 396anti-parallel
Strand 3
A
412 416anti-parallel
Strand 4
A
419 420anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 368first strand
Strand 2
A
391 396anti-parallel
Strand 3
A
412 416anti-parallel
Strand 4
A
437 443anti-parallel
Strand 5
A
446 452anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il