Analysis of interatomic Contacts of Structural Units in PDB entry:
5M3X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M3X entry

There are 2 chains in PDB entry 5M3X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 31	SER 450
B	PRO 32	SER 450

There are 26 helices in PDB entry 5M3X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	61	Right-handed alpha
Helix 2	AA2	A	63	87	Right-handed alpha
Helix 3	AA3	A	90	95	Right-handed 310
Helix 4	AA4	A	102	116	Right-handed alpha
Helix 5	AA5	A	118	130	Right-handed alpha
Helix 6	AA6	A	143	160	Right-handed alpha
Helix 7	AA7	A	188	198	Right-handed alpha
Helix 8	AA8	A	210	227	Right-handed alpha
Helix 9	AA9	A	316	318	Right-handed 310
Helix 10	AB1	A	319	328	Right-handed alpha
Helix 11	AB2	A	359	363	Right-handed alpha
Helix 12	AB3	A	364	366	Right-handed 310
Helix 13	AB4	A	367	372	Right-handed alpha
Helix 14	AB5	B	47	61	Right-handed alpha
Helix 15	AB6	B	63	87	Right-handed alpha
Helix 16	AB7	B	90	94	Right-handed 310
Helix 17	AB8	B	102	116	Right-handed alpha
Helix 18	AB9	B	118	130	Right-handed alpha
Helix 19	AC1	B	143	160	Right-handed alpha
Helix 20	AC2	B	188	198	Right-handed alpha
Helix 21	AC3	B	210	227	Right-handed alpha
Helix 22	AC4	B	316	318	Right-handed 310
Helix 23	AC5	B	319	328	Right-handed alpha
Helix 24	AC6	B	359	363	Right-handed alpha
Helix 25	AC7	B	364	366	Right-handed 310
Helix 26	AC8	B	367	374	Right-handed alpha

There are 10 sheets in PDB entry 5M3X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	186	187	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	200	205	parallel
Strand 3	A	170	180	parallel
Strand 4	A	243	254	anti-parallel
Strand 5	A	388	400	parallel
Strand 6	A	351	358	anti-parallel
Strand 7	A	96	97	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	438	445	anti-parallel
Strand 3	A	427	433	anti-parallel
Strand 4	A	307	314	anti-parallel
Strand 5	A	296	302	anti-parallel
Strand 6	A	279	291	anti-parallel
Strand 7	A	258	260	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	438	445	anti-parallel
Strand 3	A	427	433	anti-parallel
Strand 4	A	307	314	anti-parallel
Strand 5	A	296	302	anti-parallel
Strand 6	A	279	291	anti-parallel
Strand 7	A	340	349	anti-parallel
Strand 8	A	419	422	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	A	275	277	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	186	187	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	351	358	anti-parallel
Strand 3	B	388	400	anti-parallel
Strand 4	B	243	254	parallel
Strand 5	B	170	180	anti-parallel
Strand 6	B	200	205	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	438	445	anti-parallel
Strand 3	B	427	433	anti-parallel
Strand 4	B	307	314	anti-parallel
Strand 5	B	296	302	anti-parallel
Strand 6	B	279	291	anti-parallel
Strand 7	B	258	260	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	438	445	anti-parallel
Strand 3	B	427	433	anti-parallel
Strand 4	B	307	314	anti-parallel
Strand 5	B	296	302	anti-parallel
Strand 6	B	279	291	anti-parallel
Strand 7	B	340	349	anti-parallel
Strand 8	B	419	422	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	267	first strand
Strand 2	B	275	277	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M3X

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M3X