Analysis of interatomic Contacts of Structural Units in PDB entry:
5M3Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M3Y entry

There is 1 chain in PDB entry 5M3Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1SER 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 5M3Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 61Right-handed alpha
Helix 2
AA2
A
63 87Right-handed alpha
Helix 3
AA3
A
102 116Right-handed alpha
Helix 4
AA4
A
118 130Right-handed alpha
Helix 5
AA5
A
143 160Right-handed alpha
Helix 6
AA6
A
188 198Right-handed alpha
Helix 7
AA7
A
210 227Right-handed alpha
Helix 8
AA8
A
316 318Right-handed 310
Helix 9
AA9
A
319 328Right-handed alpha
Helix 10
AB1
A
329 337Right-handed 310
Helix 11
AB2
A
359 363Right-handed alpha
Helix 12
AB3
A
367 372Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 5M3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
186 187anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
352 358anti-parallel
Strand 3
A
388 400anti-parallel
Strand 4
A
243 254parallel
Strand 5
A
170 180anti-parallel
Strand 6
A
201 205parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
438 445anti-parallel
Strand 3
A
427 433anti-parallel
Strand 4
A
307 314anti-parallel
Strand 5
A
296 302anti-parallel
Strand 6
A
279 291anti-parallel
Strand 7
A
258 260anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
438 445anti-parallel
Strand 3
A
427 433anti-parallel
Strand 4
A
307 314anti-parallel
Strand 5
A
296 302anti-parallel
Strand 6
A
279 291anti-parallel
Strand 7
A
340 349anti-parallel
Strand 8
A
419 422parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
275 277anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il