Analysis of interatomic Contacts of Structural Units in PDB entry:
5M41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M41 entry

There is 1 chain in PDB entry 5M41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 17GLY 752
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5M41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 31Right-handed alpha
Helix 2
AA2
A
33 55Right-handed alpha
Helix 3
AA3
A
61 68Right-handed alpha
Helix 4
AA4
A
116 121Right-handed alpha
Helix 5
AA5
A
124 129Right-handed alpha
Helix 6
AA6
A
132 137Right-handed alpha
Helix 7
AA7
A
138 140Right-handed 310
Helix 8
AA8
A
160 166Right-handed 310
Helix 9
AA9
A
176 192Right-handed alpha
Helix 10
AB1
A
194 204Right-handed alpha
Helix 11
AB2
A
205 216Right-handed alpha
Helix 12
AB3
A
239 246Right-handed alpha
Helix 13
AB4
A
252 265Right-handed alpha
Helix 14
AB5
A
276 284Right-handed alpha
Helix 15
AB6
A
301 320Right-handed alpha
Helix 16
AB7
A
350 353Right-handed 310
Helix 17
AB8
A
373 383Right-handed alpha
Helix 18
AB9
A
385 397Right-handed alpha
Helix 19
AC1
A
405 416Right-handed alpha
Helix 20
AC2
A
443 458Right-handed alpha
Helix 21
AC3
A
469 474Right-handed alpha
Helix 22
AC4
A
545 556Right-handed alpha
Helix 23
AC5
A
602 615Right-handed alpha
Helix 24
AC6
A
617 622Right-handed alpha
Helix 25
AC7
A
624 633Right-handed alpha
Helix 26
AC8
A
634 635Right-handed 310
Helix 27
AC9
A
636 640Right-handed 310
Helix 28
AD1
A
667 677Right-handed alpha
Helix 29
AD2
A
678 686Right-handed 310
Helix 30
AD3
A
687 705Right-handed alpha
Helix 31
AD4
A
718 732Right-handed alpha
Helix 32
AD5
A
738 752Right-handed alpha
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There are 7 sheets in PDB entry 5M41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 113first strand
Strand 2
A
98 102anti-parallel
Strand 3
A
86 90anti-parallel
Strand 4
A
77 80anti-parallel
Strand 5
A
170 173anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
226 230anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 288first strand
Strand 2
A
340 348anti-parallel
Strand 3
A
293 296anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 288first strand
Strand 2
A
340 348anti-parallel
Strand 3
A
328 336anti-parallel
Strand 4
A
366 372anti-parallel
Strand 5
A
359 363anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 357first strand
Strand 2
A
427 429anti-parallel
Strand 3
A
435 437anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 500first strand
Strand 2
A
505 515anti-parallel
Strand 3
A
523 532anti-parallel
Strand 4
A
538 542anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 562first strand
Strand 2
A
571 576anti-parallel
Strand 3
A
583 589anti-parallel
Strand 4
A
594 601anti-parallel
Strand 5
A
649 652anti-parallel
Strand 6
A
713 715anti-parallel
Strand 7
A
662 666anti-parallel
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