Analysis of interatomic Contacts of Structural Units in PDB entry:
5M42


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M42 entry

There is 1 chain in PDB entry 5M42 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 38GLY 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5M42. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 54Right-handed alpha
Helix 2
AA2
A
69 88Right-handed alpha
Helix 3
AA3
A
101 104Right-handed 310
Helix 4
AA4
A
108 124Right-handed alpha
Helix 5
AA5
A
136 138Right-handed 310
Helix 6
AA6
A
139 153Right-handed alpha
Helix 7
AA7
A
168 177Right-handed alpha
Helix 8
AA8
A
178 180Right-handed 310
Helix 9
AA9
A
200 218Right-handed alpha
Helix 10
AB1
A
228 243Right-handed alpha
Helix 11
AB2
A
245 247Right-handed 310
Helix 12
AB3
A
258 268Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5M42.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 62first strand
Strand 2
A
94 99parallel
Strand 3
A
128 133parallel
Strand 4
A
158 163parallel
Strand 5
A
183 186parallel
Strand 6
A
222 225parallel
Strand 7
A
249 254parallel
Strand 8
A
271 278parallel
Strand 9
A
57 62parallel
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