Analysis of interatomic Contacts of Structural Units in PDB entry:
5M47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M47 entry

There is 1 chain in PDB entry 5M47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5M47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 39Right-handed alpha
Helix 2
AA2
A
56 58Right-handed 310
Helix 3
AA3
A
83 97Right-handed alpha
Helix 4
AA4
A
170 177Right-handed alpha
Helix 5
AA5
A
221 236Right-handed alpha
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There are 2 sheets in PDB entry 5M47. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
136 144anti-parallel
Strand 3
A
149 156anti-parallel
Strand 4
A
160 166anti-parallel
Strand 5
A
194 199parallel
Strand 6
A
205 212anti-parallel
Strand 7
A
241 247parallel
Strand 8
A
250 256anti-parallel
Strand 9
A
261 278anti-parallel
Strand 10
A
216 217first strand
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There are 15 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
136 144anti-parallel
Strand 3
A
149 156anti-parallel
Strand 4
A
160 166anti-parallel
Strand 5
A
194 199parallel
Strand 6
A
205 212anti-parallel
Strand 7
A
125 131first strand
Strand 8
A
112 121anti-parallel
Strand 9
A
104 109anti-parallel
Strand 10
A
68 74parallel
Strand 11
A
48 54anti-parallel
Strand 12
A
15 21parallel
Strand 13
A
2 12anti-parallel
Strand 14
A
261 278anti-parallel
Strand 15
A
216 217first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il