Analysis of interatomic Contacts of Structural Units in PDB entry:
5M4A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M4A entry

There is 1 chain in PDB entry 5M4A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 180LEU 751
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5M4A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
180 191Right-handed alpha
Helix 2
AA2
A
191 197Right-handed alpha
Helix 3
AA3
A
217 221Right-handed 310
Helix 4
AA4
A
231 245Right-handed alpha
Helix 5
AA5
A
246 249Right-handed 310
Helix 6
AA6
A
260 267Right-handed alpha
Helix 7
AA7
A
307 321Right-handed alpha
Helix 8
AA8
A
323 342Right-handed alpha
Helix 9
AA9
A
349 353Right-handed 310
Helix 10
AB1
A
360 372Right-handed alpha
Helix 11
AB2
A
373 376Right-handed 310
Helix 12
AB3
A
377 398Right-handed alpha
Helix 13
AB4
A
430 441Right-handed alpha
Helix 14
AB5
A
444 454Right-handed alpha
Helix 15
AB6
A
459 475Right-handed alpha
Helix 16
AB7
A
492 514Right-handed alpha
Helix 17
AB8
A
528 547Right-handed alpha
Helix 18
AB9
A
570 573Right-handed 310
Helix 19
AC1
A
574 580Right-handed alpha
Helix 20
AC2
A
583 594Right-handed alpha
Helix 21
AC3
A
594 598Right-handed alpha
Helix 22
AC4
A
630 644Right-handed alpha
Helix 23
AC5
A
647 668Right-handed alpha
Helix 24
AC6
A
706 718Right-handed alpha
Helix 25
AC7
A
721 730Right-handed alpha
Helix 26
AC8
A
733 741Right-handed alpha
Helix 27
AC9
A
742 748Right-handed alpha
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There are 7 sheets in PDB entry 5M4A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
296 297anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 254first strand
Strand 2
A
224 227parallel
Strand 3
A
273 274parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 282first strand
Strand 2
A
289 293anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 491first strand
Strand 2
A
558 559anti-parallel
Strand 3
A
564 565anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 519first strand
Strand 2
A
526 527anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
599 600first strand
Strand 2
A
603 604anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
628 629first strand
Strand 2
A
676 677anti-parallel
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