Analysis of interatomic Contacts of Structural Units in PDB entry:
5M4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M4D entry

There is 1 chain in PDB entry 5M4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2TRP 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5M4D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-2 4Right-handed alpha
Helix 2
AA2
A
4 13Right-handed alpha
Helix 3
AA3
A
14 18Right-handed 310
Helix 4
AA4
A
47 51Right-handed 310
Helix 5
AA5
A
58 71Right-handed alpha
Helix 6
AA6
A
82 96Right-handed alpha
Helix 7
AA7
A
109 126Right-handed alpha
Helix 8
AA8
A
141 146Right-handed alpha
Helix 9
AA9
A
150 154Right-handed 310
Helix 10
AB1
A
173 177Right-handed 310
Helix 11
AB2
A
180 192Right-handed alpha
Helix 12
AB3
A
219 231Right-handed alpha
Helix 13
AB4
A
251 256Right-handed 310
Helix 14
AB5
A
266 271Right-handed 310
Helix 15
AB6
A
282 286Right-handed alpha
Helix 16
AB7
A
299 316Right-handed alpha
Helix 17
AB8
A
317 340Right-handed alpha
Helix 18
AB9
A
367 382Right-handed alpha
Helix 19
AC1
A
404 422Right-handed alpha
Helix 20
AC2
A
423 425Right-handed 310
Helix 21
AC3
A
426 432Right-handed alpha
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There are 3 sheets in PDB entry 5M4D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
33 36anti-parallel
Strand 3
A
41 44anti-parallel
Strand 4
A
383 384parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
276 281anti-parallel
Strand 3
A
262 265anti-parallel
Strand 4
A
234 238parallel
Strand 5
A
199 204parallel
Strand 6
A
129 133parallel
Strand 7
A
162 165parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 349first strand
Strand 2
A
352 357anti-parallel
Strand 3
A
394 397anti-parallel
Strand 4
A
386 388anti-parallel
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