Analysis of interatomic Contacts of Structural Units in PDB entry:
5M4R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M4R entry

There are 5 chains in PDB entry 5M4R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 115GLY 200
B
 VAL 114GLY 200
C
 VAL 114GLY 200
D
 VAL 114LYS 201
E
 VAL 114THR 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5M4R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
115 137Right-handed alpha
Helix 2
AA2
A
141 155Right-handed alpha
Helix 3
AA3
A
160 169Right-handed alpha
Helix 4
AA4
A
171 175Right-handed 310
Helix 5
AA5
A
180 185Right-handed alpha
Helix 6
AA6
A
189 200Right-handed alpha
Helix 7
AA7
B
115 137Right-handed alpha
Helix 8
AA8
B
141 155Right-handed alpha
Helix 9
AA9
B
160 171Right-handed alpha
Helix 10
AB1
B
172 175Right-handed 310
Helix 11
AB2
B
189 200Right-handed alpha
Helix 12
AB3
C
115 137Right-handed alpha
Helix 13
AB4
C
141 155Right-handed alpha
Helix 14
AB5
C
160 170Right-handed alpha
Helix 15
AB6
C
171 175Right-handed 310
Helix 16
AB7
C
180 185Right-handed alpha
Helix 17
AB8
C
189 200Right-handed alpha
Helix 18
AB9
D
115 137Right-handed alpha
Helix 19
AC1
D
142 155Right-handed alpha
Helix 20
AC2
D
162 167Right-handed alpha
Helix 21
AC3
D
180 187Right-handed alpha
Helix 22
AC4
D
189 200Right-handed alpha
Helix 23
AC5
E
115 137Right-handed alpha
Helix 24
AC6
E
143 155Right-handed alpha
Helix 25
AC7
E
160 170Right-handed alpha
Helix 26
AC8
E
171 175Right-handed 310
Helix 27
AC9
E
182 186Right-handed 310
Helix 28
AD1
E
189 200Right-handed alpha
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There are no sheets in PDB entry 5M4R
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il