Analysis of interatomic Contacts of Structural Units in PDB entry:
5M4Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M4Z entry

There are 2 chains in PDB entry 5M4Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 18VAL 307
B
 TYR 18MET 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5M4Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 37Right-handed alpha
Helix 2
AA2
A
61 64Right-handed 310
Helix 3
AA3
A
74 87Right-handed alpha
Helix 4
AA4
A
91 98Right-handed alpha
Helix 5
AA5
A
108 115Right-handed alpha
Helix 6
AA6
A
128 136Right-handed alpha
Helix 7
AA7
A
153 165Right-handed alpha
Helix 8
AA8
A
177 184Right-handed 310
Helix 9
AA9
A
215 235Right-handed alpha
Helix 10
AB1
A
255 264Right-handed alpha
Helix 11
AB2
A
281 285Right-handed 310
Helix 12
AB3
A
286 288Right-handed 310
Helix 13
AB4
B
20 37Right-handed alpha
Helix 14
AB5
B
61 64Right-handed 310
Helix 15
AB6
B
74 88Right-handed alpha
Helix 16
AB7
B
91 97Right-handed alpha
Helix 17
AB8
B
104 107Right-handed 310
Helix 18
AB9
B
108 115Right-handed alpha
Helix 19
AC1
B
128 136Right-handed alpha
Helix 20
AC2
B
153 165Right-handed alpha
Helix 21
AC3
B
177 184Right-handed 310
Helix 22
AC4
B
215 235Right-handed alpha
Helix 23
AC5
B
255 264Right-handed alpha
Helix 24
AC6
B
281 285Right-handed 310
Helix 25
AC7
B
286 288Right-handed 310
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There are 4 sheets in PDB entry 5M4Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
48 59anti-parallel
Strand 3
A
238 252anti-parallel
Strand 4
A
201 212parallel
Strand 5
A
190 198anti-parallel
Strand 6
A
172 174anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
290 293anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
48 59anti-parallel
Strand 3
B
238 252anti-parallel
Strand 4
B
201 212parallel
Strand 5
B
190 198anti-parallel
Strand 6
B
172 174anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 275first strand
Strand 2
B
290 293anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il