Analysis of interatomic Contacts of Structural Units in PDB entry:
5M50


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M50 entry

There are 5 chains in PDB entry 5M50 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ARG 2SER 439
E
 ARG 2ASP 437
A
 ARG 2SER 439
B
 ARG 2ASP 437
C
 ALA 1121SER 1238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 5M50. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
10 26Right-handed alpha
Helix 2
AA2
D
71 81Right-handed alpha
Helix 3
AA3
D
102 107Right-handed alpha
Helix 4
AA4
D
111 129Right-handed alpha
Helix 5
AA5
D
144 161Right-handed alpha
Helix 6
AA6
D
181 198Right-handed alpha
Helix 7
AA7
D
205 216Right-handed alpha
Helix 8
AA8
D
223 240Right-handed alpha
Helix 9
AA9
D
251 259Right-handed alpha
Helix 10
AB1
D
287 296Right-handed alpha
Helix 11
AB2
D
297 301Right-handed 310
Helix 12
AB3
D
324 338Right-handed alpha
Helix 13
AB4
D
383 402Right-handed alpha
Helix 14
AB5
D
404 408Right-handed 310
Helix 15
AB6
D
414 438Right-handed alpha
Helix 16
AB7
E
10 29Right-handed alpha
Helix 17
AB8
E
41 48Right-handed alpha
Helix 18
AB9
E
71 81Right-handed alpha
Helix 19
AC1
E
88 90Right-handed 310
Helix 20
AC2
E
102 107Right-handed alpha
Helix 21
AC3
E
110 129Right-handed alpha
Helix 22
AC4
E
143 161Right-handed alpha
Helix 23
AC5
E
182 198Right-handed alpha
Helix 24
AC6
E
205 215Right-handed alpha
Helix 25
AC7
E
223 244Right-handed alpha
Helix 26
AC8
E
251 260Right-handed alpha
Helix 27
AC9
E
278 282Right-handed 310
Helix 28
AD1
E
287 297Right-handed alpha
Helix 29
AD2
E
298 301Right-handed 310
Helix 30
AD3
E
324 339Right-handed alpha
Helix 31
AD4
E
340 343Right-handed 310
Helix 32
AD5
E
384 402Right-handed alpha
Helix 33
AD6
E
405 410Right-handed alpha
Helix 34
AD7
E
414 437Right-handed alpha
Helix 35
AD8
A
10 27Right-handed alpha
Helix 36
AD9
A
71 80Right-handed alpha
Helix 37
AE1
A
102 108Right-handed alpha
Helix 38
AE2
A
111 129Right-handed alpha
Helix 39
AE3
A
147 161Right-handed alpha
Helix 40
AE4
A
182 198Right-handed alpha
Helix 41
AE5
A
205 216Right-handed alpha
Helix 42
AE6
A
223 240Right-handed alpha
Helix 43
AE7
A
251 259Right-handed alpha
Helix 44
AE8
A
287 296Right-handed alpha
Helix 45
AE9
A
297 301Right-handed 310
Helix 46
AF1
A
324 338Right-handed alpha
Helix 47
AF2
A
383 402Right-handed alpha
Helix 48
AF3
A
405 410Right-handed alpha
Helix 49
AF4
A
414 438Right-handed alpha
Helix 50
AF5
B
10 29Right-handed alpha
Helix 51
AF6
B
41 48Right-handed alpha
Helix 52
AF7
B
48 52Right-handed alpha
Helix 53
AF8
B
72 81Right-handed alpha
Helix 54
AF9
B
88 90Right-handed 310
Helix 55
AG1
B
102 107Right-handed alpha
Helix 56
AG2
B
110 129Right-handed alpha
Helix 57
AG3
B
143 161Right-handed alpha
Helix 58
AG4
B
182 198Right-handed alpha
Helix 59
AG5
B
205 215Right-handed alpha
Helix 60
AG6
B
223 244Right-handed alpha
Helix 61
AG7
B
251 260Right-handed alpha
Helix 62
AG8
B
287 297Right-handed alpha
Helix 63
AG9
B
298 301Right-handed 310
Helix 64
AH1
B
324 339Right-handed alpha
Helix 65
AH2
B
340 343Right-handed 310
Helix 66
AH3
B
384 402Right-handed alpha
Helix 67
AH4
B
404 412Right-handed alpha
Helix 68
AH5
B
414 437Right-handed alpha
Helix 69
AH6
C
1124 1135Right-handed alpha
Helix 70
AH7
C
1142 1156Right-handed alpha
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There are 11 sheets in PDB entry 5M50. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 94first strand
Strand 2
D
65 69parallel
Strand 3
D
3 9parallel
Strand 4
D
132 140parallel
Strand 5
D
165 171parallel
Strand 6
D
200 204parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 55first strand
Strand 2
D
61 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
269 272first strand
Strand 2
D
373 380anti-parallel
Strand 3
D
314 321anti-parallel
Strand 4
D
351 355parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
92 93first strand
Strand 2
E
65 68parallel
Strand 3
E
3 9parallel
Strand 4
E
132 138parallel
Strand 5
E
165 171parallel
Strand 6
E
200 204parallel
Strand 7
E
267 272parallel
Strand 8
E
373 381anti-parallel
Strand 9
E
312 321anti-parallel
Strand 10
E
351 356parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
53 56first strand
Strand 2
E
60 63anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
3 9parallel
Strand 4
A
132 140parallel
Strand 5
A
165 171parallel
Strand 6
A
200 204parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 272first strand
Strand 2
A
373 380anti-parallel
Strand 3
A
314 321anti-parallel
Strand 4
A
353 355parallel
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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
65 68parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 171parallel
Strand 6
B
200 204parallel
Strand 7
B
267 272parallel
Strand 8
B
373 381anti-parallel
Strand 9
B
312 321anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
60 63anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1195 1196first strand
Strand 2
C
1185 1190anti-parallel
Strand 3
C
1172 1178anti-parallel
Strand 4
C
1160 1165anti-parallel
Strand 5
C
1228 1231parallel
Strand 6
C
1201 1208anti-parallel
Strand 7
C
1213 1217anti-parallel
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