Analysis of interatomic Contacts of Structural Units in PDB entry:
5M52


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M52 entry

There are 4 chains in PDB entry 5M52 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 114LYS 2163
C
SER 2148SER 2413
B
VAL 117LYS 2163
D
MET 2146SER 2413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are190 helices in PDB entry 5M52. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
114 121Right-handed alpha
Helix 2
AA2
A
122 131Right-handed alpha
Helix 3
AA3
A
136 154Right-handed alpha
Helix 4
AA4
A
175 188Right-handed alpha
Helix 5
AA5
A
291 301Right-handed alpha
Helix 6
AA6
A
305 323Right-handed alpha
Helix 7
AA7
A
326 338Right-handed alpha
Helix 8
AA8
A
339 344Right-handed alpha
Helix 9
AA9
A
345 352Right-handed alpha
Helix 10
AB1
A
352 365Right-handed alpha
Helix 11
AB2
A
371 379Right-handed alpha
Helix 12
AB3
A
428 433Right-handed alpha
Helix 13
AB4
A
484 488Right-handed 310
Helix 14
AB5
A
500 511Right-handed alpha
Helix 15
AB6
A
526 543Right-handed alpha
Helix 16
AB7
A
563 578Right-handed alpha
Helix 17
AB8
A
597 602Right-handed alpha
Helix 18
AB9
A
608 618Right-handed alpha
Helix 19
AC1
A
621 626Right-handed alpha
Helix 20
AC2
A
635 641Right-handed 310
Helix 21
AC3
A
643 656Right-handed alpha
Helix 22
AC4
A
676 684Right-handed alpha
Helix 23
AC5
A
695 699Right-handed 310
Helix 24
AC6
A
714 737Right-handed alpha
Helix 25
AC7
A
746 762Right-handed alpha
Helix 26
AC8
A
777 786Right-handed alpha
Helix 27
AC9
A
790 800Right-handed alpha
Helix 28
AD1
A
809 823Right-handed alpha
Helix 29
AD2
A
832 835Right-handed 310
Helix 30
AD3
A
864 873Right-handed alpha
Helix 31
AD4
A
894 903Right-handed alpha
Helix 32
AD5
A
915 926Right-handed alpha
Helix 33
AD6
A
931 940Right-handed alpha
Helix 34
AD7
A
942 951Right-handed alpha
Helix 35
AD8
A
959 964Right-handed alpha
Helix 36
AD9
A
966 984Right-handed alpha
Helix 37
AE1
A
999 1008Right-handed alpha
Helix 38
AE2
A
1011 1022Right-handed alpha
Helix 39
AE3
A
1027 1037Right-handed alpha
Helix 40
AE4
A
1038 1042Right-handed 310
Helix 41
AE5
A
1047 1060Right-handed alpha
Helix 42
AE6
A
1071 1086Right-handed alpha
Helix 43
AE7
A
1091 1120Right-handed alpha
Helix 44
AE8
A
1121 1138Right-handed alpha
Helix 45
AE9
A
1144 1148Right-handed 310
Helix 46
AF1
A
1153 1163Right-handed alpha
Helix 47
AF2
A
1166 1171Right-handed 310
Helix 48
AF3
A
1175 1183Right-handed alpha
Helix 49
AF4
A
1190 1199Right-handed alpha
Helix 50
AF5
A
1277 1283Right-handed alpha
Helix 51
AF6
A
1330 1334Right-handed 310
Helix 52
AF7
A
1336 1343Right-handed alpha
Helix 53
AF8
A
1349 1361Right-handed alpha
Helix 54
AF9
A
1375 1391Right-handed alpha
Helix 55
AG1
A
1401 1416Right-handed alpha
Helix 56
AG2
A
1431 1442Right-handed alpha
Helix 57
AG3
A
1448 1456Right-handed alpha
Helix 58
AG4
A
1462 1467Right-handed alpha
Helix 59
AG5
A
1476 1480Right-handed 310
Helix 60
AG6
A
1481 1502Right-handed alpha
Helix 61
AG7
A
1518 1526Right-handed alpha
Helix 62
AG8
A
1560 1577Right-handed alpha
Helix 63
AG9
A
1587 1600Right-handed alpha
Helix 64
AH1
A
1613 1623Right-handed alpha
Helix 65
AH2
A
1629 1636Right-handed alpha
Helix 66
AH3
A
1645 1658Right-handed alpha
Helix 67
AH4
A
1669 1671Right-handed 310
Helix 68
AH5
A
1699 1708Right-handed alpha
Helix 69
AH6
A
1725 1738Right-handed alpha
Helix 70
AH7
A
1745 1748Right-handed 310
Helix 71
AH8
A
1749 1760Right-handed alpha
Helix 72
AH9
A
1765 1774Right-handed alpha
Helix 73
AI1
A
1777 1785Right-handed alpha
Helix 74
AI2
A
1786 1790Right-handed 310
Helix 75
AI3
A
1795 1817Right-handed alpha
Helix 76
AI4
A
1847 1857Right-handed alpha
Helix 77
AI5
A
1859 1870Right-handed alpha
Helix 78
AI6
A
1875 1885Right-handed alpha
Helix 79
AI7
A
1886 1892Right-handed 310
Helix 80
AI8
A
1897 1907Right-handed alpha
Helix 81
AI9
A
1921 1936Right-handed alpha
Helix 82
AJ1
A
1940 1969Right-handed alpha
Helix 83
AJ2
A
1972 1986Right-handed alpha
Helix 84
AJ3
A
1992 1997Right-handed 310
Helix 85
AJ4
A
2001 2011Right-handed alpha
Helix 86
AJ5
A
2015 2022Right-handed alpha
Helix 87
AJ6
A
2023 2031Right-handed alpha
Helix 88
AJ7
A
2034 2048Right-handed alpha
Helix 89
AJ8
C
2151 2160Right-handed alpha
Helix 90
AJ9
C
2161 2166Right-handed alpha
Helix 91
AK1
C
2187 2197Right-handed alpha
Helix 92
AK2
C
2270 2282Right-handed alpha
Helix 93
AK3
C
2308 2318Right-handed alpha
Helix 94
AK4
C
2330 2332Right-handed 310
Helix 95
AK5
C
2362 2366Right-handed 310
Helix 96
AK6
B
118 128Right-handed alpha
Helix 97
AK7
B
136 148Right-handed alpha
Helix 98
AK8
B
177 186Right-handed alpha
Helix 99
AK9
B
291 301Right-handed alpha
Helix 100
AL1
B
305 323Right-handed alpha
Helix 101
AL2
B
326 339Right-handed alpha
Helix 102
AL3
B
368 376Right-handed alpha
Helix 103
AL4
B
428 433Right-handed alpha
Helix 104
AL5
B
486 491Right-handed 310
Helix 105
AL6
B
500 506Right-handed alpha
Helix 106
AL7
B
506 511Right-handed alpha
Helix 107
AL8
B
527 539Right-handed alpha
Helix 108
AL9
B
563 578Right-handed alpha
Helix 109
AM1
B
594 602Right-handed alpha
Helix 110
AM2
B
608 618Right-handed alpha
Helix 111
AM3
B
624 626Right-handed 310
Helix 112
AM4
B
636 641Right-handed 310
Helix 113
AM5
B
643 655Right-handed alpha
Helix 114
AM6
B
676 685Right-handed alpha
Helix 115
AM7
B
695 699Right-handed 310
Helix 116
AM8
B
716 737Right-handed alpha
Helix 117
AM9
B
746 764Right-handed alpha
Helix 118
AN1
B
766 771Right-handed alpha
Helix 119
AN2
B
774 786Right-handed alpha
Helix 120
AN3
B
790 798Right-handed alpha
Helix 121
AN4
B
809 822Right-handed alpha
Helix 122
AN5
B
832 835Right-handed 310
Helix 123
AN6
B
864 873Right-handed alpha
Helix 124
AN7
B
874 876Right-handed 310
Helix 125
AN8
B
894 903Right-handed alpha
Helix 126
AN9
B
915 926Right-handed alpha
Helix 127
AO1
B
931 940Right-handed alpha
Helix 128
AO2
B
942 951Right-handed alpha
Helix 129
AO3
B
959 964Right-handed alpha
Helix 130
AO4
B
966 984Right-handed alpha
Helix 131
AO5
B
999 1008Right-handed alpha
Helix 132
AO6
B
1011 1022Right-handed alpha
Helix 133
AO7
B
1027 1037Right-handed alpha
Helix 134
AO8
B
1038 1042Right-handed 310
Helix 135
AO9
B
1050 1061Right-handed alpha
Helix 136
AP1
B
1071 1086Right-handed alpha
Helix 137
AP2
B
1091 1120Right-handed alpha
Helix 138
AP3
B
1121 1138Right-handed alpha
Helix 139
AP4
B
1144 1149Right-handed 310
Helix 140
AP5
B
1153 1163Right-handed alpha
Helix 141
AP6
B
1166 1173Right-handed 310
Helix 142
AP7
B
1175 1183Right-handed alpha
Helix 143
AP8
B
1185 1187Right-handed 310
Helix 144
AP9
B
1188 1199Right-handed alpha
Helix 145
AQ1
B
1277 1283Right-handed alpha
Helix 146
AQ2
B
1330 1334Right-handed 310
Helix 147
AQ3
B
1336 1342Right-handed alpha
Helix 148
AQ4
B
1349 1361Right-handed alpha
Helix 149
AQ5
B
1376 1390Right-handed alpha
Helix 150
AQ6
B
1401 1416Right-handed alpha
Helix 151
AQ7
B
1431 1442Right-handed alpha
Helix 152
AQ8
B
1448 1456Right-handed alpha
Helix 153
AQ9
B
1462 1467Right-handed alpha
Helix 154
AR1
B
1476 1480Right-handed 310
Helix 155
AR2
B
1481 1503Right-handed alpha
Helix 156
AR3
B
1518 1526Right-handed alpha
Helix 157
AR4
B
1560 1577Right-handed alpha
Helix 158
AR5
B
1587 1605Right-handed alpha
Helix 159
AR6
B
1613 1623Right-handed alpha
Helix 160
AR7
B
1626 1628Right-handed 310
Helix 161
AR8
B
1629 1636Right-handed alpha
Helix 162
AR9
B
1645 1659Right-handed alpha
Helix 163
AS1
B
1699 1708Right-handed alpha
Helix 164
AS2
B
1726 1738Right-handed alpha
Helix 165
AS3
B
1745 1748Right-handed 310
Helix 166
AS4
B
1749 1760Right-handed alpha
Helix 167
AS5
B
1765 1773Right-handed alpha
Helix 168
AS6
B
1776 1785Right-handed alpha
Helix 169
AS7
B
1795 1817Right-handed alpha
Helix 170
AS8
B
1847 1857Right-handed alpha
Helix 171
AS9
B
1859 1870Right-handed alpha
Helix 172
AT1
B
1875 1885Right-handed alpha
Helix 173
AT2
B
1886 1892Right-handed 310
Helix 174
AT3
B
1897 1907Right-handed alpha
Helix 175
AT4
B
1921 1936Right-handed alpha
Helix 176
AT5
B
1940 1969Right-handed alpha
Helix 177
AT6
B
1972 1986Right-handed alpha
Helix 178
AT7
B
1992 1997Right-handed 310
Helix 179
AT8
B
2001 2011Right-handed alpha
Helix 180
AT9
B
2015 2022Right-handed alpha
Helix 181
AU1
B
2023 2031Right-handed alpha
Helix 182
AU2
B
2034 2047Right-handed alpha
Helix 183
AU3
D
2150 2159Right-handed alpha
Helix 184
AU4
D
2160 2167Right-handed 310
Helix 185
AU5
D
2187 2197Right-handed alpha
Helix 186
AU6
D
2270 2282Right-handed alpha
Helix 187
AU7
D
2308 2318Right-handed alpha
Helix 188
AU8
D
2330 2334Right-handed 310
Helix 189
AU9
D
2362 2366Right-handed 310
Helix 190
AV1
D
2388 2393Right-handed alpha
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There are 33 sheets in PDB entry 5M52. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
267 272first strand
Strand 2
A
1544 1549anti-parallel
Strand 3
A
1718 1723parallel
Strand 4
A
1679 1683parallel
Strand 5
A
1581 1585parallel
Strand 6
A
1663 1667parallel
Strand 7
A
1637 1640parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
453 455first strand
Strand 2
A
460 465anti-parallel
Strand 3
A
703 710anti-parallel
Strand 4
A
884 891parallel
Strand 5
A
844 848parallel
Strand 6
A
740 743parallel
Strand 7
A
827 830parallel
Strand 8
A
802 804parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
584 587first strand
Strand 2
A
603 607parallel
Strand 3
A
556 560parallel
Strand 4
A
628 633parallel
Strand 5
A
666 671parallel
Strand 6
A
517 520parallel
Strand 7
A
691 693parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
851 854first strand
Strand 2
A
859 862anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
987 990first strand
Strand 2
A
995 998anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1202 1210first strand
Strand 2
A
1215 1224anti-parallel
Strand 3
A
1267 1275anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1251 1259first strand
Strand 2
A
1237 1244anti-parallel
Strand 3
A
1287 1294anti-parallel
Strand 4
A
1304 1307anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1444 1447first strand
Strand 2
A
1395 1398parallel
Strand 3
A
1470 1474parallel
Strand 4
A
1507 1512parallel
Strand 5
A
1366 1369parallel
Strand 6
A
1532 1534parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1686 1689first strand
Strand 2
A
1694 1697anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1820 1823first strand
Strand 2
A
1843 1846anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2053 2057first strand
Strand 2
A
2068 2076anti-parallel
Strand 3
A
2123 2131anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2110 2113first strand
Strand 2
A
2099 2105anti-parallel
Strand 3
A
2116 2117anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2110 2113first strand
Strand 2
A
2099 2105anti-parallel
Strand 3
A
2140 2146anti-parallel
Strand 4
A
2154 2158anti-parallel
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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2169 2171first strand
Strand 2
C
2300 2307parallel
Strand 3
C
2289 2294anti-parallel
Strand 4
C
2254 2262parallel
Strand 5
C
2204 2211anti-parallel
Strand 6
C
2218 2225anti-parallel
Strand 7
C
2182 2186parallel
Strand 8
C
2340 2342parallel
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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2334 2336first strand
Strand 2
C
2300 2307anti-parallel
Strand 3
C
2289 2294anti-parallel
Strand 4
C
2254 2262parallel
Strand 5
C
2204 2211anti-parallel
Strand 6
C
2218 2225anti-parallel
Strand 7
C
2348 2352parallel
Strand 8
C
2374 2376anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2229 2232first strand
Strand 2
C
2235 2238anti-parallel
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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
266 269first strand
Strand 2
B
1544 1551anti-parallel
Strand 3
B
1718 1725parallel
Strand 4
B
1679 1683parallel
Strand 5
B
1581 1585parallel
Strand 6
B
1663 1667parallel
Strand 7
B
1637 1640parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
453 456first strand
Strand 2
B
460 464anti-parallel
Strand 3
B
703 710anti-parallel
Strand 4
B
884 891parallel
Strand 5
B
844 848parallel
Strand 6
B
740 743parallel
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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
585 587first strand
Strand 2
B
604 607parallel
Strand 3
B
556 560parallel
Strand 4
B
628 634parallel
Strand 5
B
666 671parallel
Strand 6
B
517 520parallel
Strand 7
B
691 693parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
802 804first strand
Strand 2
B
828 830parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
852 854first strand
Strand 2
B
859 861anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
987 990first strand
Strand 2
B
995 998anti-parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1202 1210first strand
Strand 2
B
1215 1224anti-parallel
Strand 3
B
1267 1275anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1251 1259first strand
Strand 2
B
1237 1244anti-parallel
Strand 3
B
1287 1294anti-parallel
Strand 4
B
1304 1307anti-parallel
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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1366 1370first strand
Strand 2
B
1507 1513parallel
Strand 3
B
1470 1474parallel
Strand 4
B
1395 1398parallel
Strand 5
B
1444 1447parallel
Strand 6
B
1424 1426parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1686 1689first strand
Strand 2
B
1694 1697anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1820 1823first strand
Strand 2
B
1843 1846anti-parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2051 2056first strand
Strand 2
B
2068 2077anti-parallel
Strand 3
B
2123 2131anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2110 2117first strand
Strand 2
B
2099 2105anti-parallel
Strand 3
B
2140 2146anti-parallel
Strand 4
B
2154 2157anti-parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2136 2138first strand
Strand 2
B
2160 2162anti-parallel
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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
2169 2171first strand
Strand 2
D
2299 2305parallel
Strand 3
D
2289 2296anti-parallel
Strand 4
D
2254 2262parallel
Strand 5
D
2204 2211anti-parallel
Strand 6
D
2219 2225anti-parallel
Strand 7
D
2183 2186parallel
Strand 8
D
2339 2342parallel
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There are 8 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
2169 2171first strand
Strand 2
D
2299 2305parallel
Strand 3
D
2289 2296anti-parallel
Strand 4
D
2254 2262parallel
Strand 5
D
2204 2211anti-parallel
Strand 6
D
2219 2225anti-parallel
Strand 7
D
2348 2352parallel
Strand 8
D
2374 2376anti-parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
2229 2232first strand
Strand 2
D
2235 2238anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il