Analysis of interatomic Contacts of Structural Units in PDB entry:
5M54

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M54 entry

There are 5 chains in PDB entry 5M54 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LYS 1484	PRO 1600
D	ARG 2	SER 439
E	ARG 2	ASP 437
A	ARG 2	SER 439
B	ARG 2	ASP 437

There are 77 helices in PDB entry 5M54. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	1486	1495	Right-handed alpha
Helix 2	AA2	C	1504	1518	Right-handed alpha
Helix 3	AA3	D	10	27	Right-handed alpha
Helix 4	AA4	D	71	80	Right-handed alpha
Helix 5	AA5	D	102	108	Right-handed alpha
Helix 6	AA6	D	110	113	Right-handed 310
Helix 7	AA7	D	114	129	Right-handed alpha
Helix 8	AA8	D	144	161	Right-handed alpha
Helix 9	AA9	D	182	198	Right-handed alpha
Helix 10	AB1	D	205	216	Right-handed alpha
Helix 11	AB2	D	223	239	Right-handed alpha
Helix 12	AB3	D	254	259	Right-handed alpha
Helix 13	AB4	D	287	296	Right-handed alpha
Helix 14	AB5	D	297	301	Right-handed 310
Helix 15	AB6	D	306	310	Right-handed 310
Helix 16	AB7	D	324	338	Right-handed alpha
Helix 17	AB8	D	383	402	Right-handed alpha
Helix 18	AB9	D	405	410	Right-handed alpha
Helix 19	AC1	D	414	438	Right-handed alpha
Helix 20	AC2	E	10	28	Right-handed alpha
Helix 21	AC3	E	41	48	Right-handed alpha
Helix 22	AC4	E	48	52	Right-handed alpha
Helix 23	AC5	E	72	81	Right-handed alpha
Helix 24	AC6	E	88	90	Right-handed 310
Helix 25	AC7	E	102	108	Right-handed alpha
Helix 26	AC8	E	111	127	Right-handed alpha
Helix 27	AC9	E	147	161	Right-handed alpha
Helix 28	AD1	E	182	198	Right-handed alpha
Helix 29	AD2	E	206	216	Right-handed alpha
Helix 30	AD3	E	223	244	Right-handed alpha
Helix 31	AD4	E	251	260	Right-handed alpha
Helix 32	AD5	E	279	283	Right-handed 310
Helix 33	AD6	E	287	296	Right-handed alpha
Helix 34	AD7	E	297	301	Right-handed 310
Helix 35	AD8	E	324	339	Right-handed alpha
Helix 36	AD9	E	340	343	Right-handed 310
Helix 37	AE1	E	383	402	Right-handed alpha
Helix 38	AE2	E	404	412	Right-handed alpha
Helix 39	AE3	E	414	437	Right-handed alpha
Helix 40	AE4	A	10	27	Right-handed alpha
Helix 41	AE5	A	71	80	Right-handed alpha
Helix 42	AE6	A	102	108	Right-handed alpha
Helix 43	AE7	A	110	113	Right-handed 310
Helix 44	AE8	A	114	129	Right-handed alpha
Helix 45	AE9	A	144	161	Right-handed alpha
Helix 46	AF1	A	182	198	Right-handed alpha
Helix 47	AF2	A	205	216	Right-handed alpha
Helix 48	AF3	A	223	239	Right-handed alpha
Helix 49	AF4	A	254	259	Right-handed alpha
Helix 50	AF5	A	279	283	Right-handed 310
Helix 51	AF6	A	287	296	Right-handed alpha
Helix 52	AF7	A	297	301	Right-handed 310
Helix 53	AF8	A	306	310	Right-handed 310
Helix 54	AF9	A	324	338	Right-handed alpha
Helix 55	AG1	A	383	402	Right-handed alpha
Helix 56	AG2	A	405	410	Right-handed alpha
Helix 57	AG3	A	414	438	Right-handed alpha
Helix 58	AG4	B	10	28	Right-handed alpha
Helix 59	AG5	B	41	48	Right-handed alpha
Helix 60	AG6	B	48	52	Right-handed alpha
Helix 61	AG7	B	72	81	Right-handed alpha
Helix 62	AG8	B	88	90	Right-handed 310
Helix 63	AG9	B	102	108	Right-handed alpha
Helix 64	AH1	B	111	127	Right-handed alpha
Helix 65	AH2	B	146	161	Right-handed alpha
Helix 66	AH3	B	182	198	Right-handed alpha
Helix 67	AH4	B	206	216	Right-handed alpha
Helix 68	AH5	B	223	244	Right-handed alpha
Helix 69	AH6	B	251	260	Right-handed alpha
Helix 70	AH7	B	279	283	Right-handed 310
Helix 71	AH8	B	287	296	Right-handed alpha
Helix 72	AH9	B	297	301	Right-handed 310
Helix 73	AI1	B	324	339	Right-handed alpha
Helix 74	AI2	B	340	343	Right-handed 310
Helix 75	AI3	B	383	402	Right-handed alpha
Helix 76	AI4	B	404	412	Right-handed alpha
Helix 77	AI5	B	414	437	Right-handed alpha

There are 14 sheets in PDB entry 5M54. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1524	1527	first strand
Strand 2	C	1534	1538	anti-parallel
Strand 3	C	1549	1552	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1575	1579	first strand
Strand 2	C	1563	1570	anti-parallel
Strand 3	C	1590	1593	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	65	69	parallel
Strand 3	D	3	9	parallel
Strand 4	D	132	140	parallel
Strand 5	D	165	171	parallel
Strand 6	D	200	204	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	61	63	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	272	first strand
Strand 2	D	373	379	anti-parallel
Strand 3	D	315	321	anti-parallel
Strand 4	D	353	355	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	93	first strand
Strand 2	E	65	68	parallel
Strand 3	E	3	9	parallel
Strand 4	E	132	140	parallel
Strand 5	E	165	172	parallel
Strand 6	E	204	205	parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	93	first strand
Strand 2	E	65	68	parallel
Strand 3	E	3	9	parallel
Strand 4	E	132	140	parallel
Strand 5	E	165	172	parallel
Strand 6	E	200	202	parallel
Strand 7	E	267	272	parallel
Strand 8	E	373	381	anti-parallel
Strand 9	E	312	321	anti-parallel
Strand 10	E	351	356	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	56	first strand
Strand 2	E	60	63	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	3	9	parallel
Strand 4	A	132	140	parallel
Strand 5	A	165	171	parallel
Strand 6	A	200	204	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	272	first strand
Strand 2	A	373	379	anti-parallel
Strand 3	A	315	321	anti-parallel
Strand 4	A	353	355	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	65	68	parallel
Strand 3	B	3	9	parallel
Strand 4	B	132	140	parallel
Strand 5	B	165	172	parallel
Strand 6	B	204	205	parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	65	68	parallel
Strand 3	B	3	9	parallel
Strand 4	B	132	140	parallel
Strand 5	B	165	172	parallel
Strand 6	B	200	202	parallel
Strand 7	B	267	272	parallel
Strand 8	B	373	381	anti-parallel
Strand 9	B	312	321	anti-parallel
Strand 10	B	351	356	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	60	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M54

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M54