Analysis of interatomic Contacts of Structural Units in PDB entry:
5M58


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M58 entry

There are 2 chains in PDB entry 5M58 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 230
B
 MET 1ALA 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5M58. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 20Right-handed alpha
Helix 2
AA2
A
21 24Right-handed 310
Helix 3
AA3
A
25 36Right-handed alpha
Helix 4
AA4
A
51 61Right-handed alpha
Helix 5
AA5
A
72 86Right-handed alpha
Helix 6
AA6
A
103 107Right-handed 310
Helix 7
AA7
A
118 122Right-handed 310
Helix 8
AA8
A
124 135Right-handed alpha
Helix 9
AA9
A
149 153Right-handed 310
Helix 10
AB1
A
154 167Right-handed alpha
Helix 11
AB2
A
171 184Right-handed alpha
Helix 12
AB3
A
187 202Right-handed alpha
Helix 13
AB4
B
7 21Right-handed alpha
Helix 14
AB5
B
22 24Right-handed 310
Helix 15
AB6
B
25 35Right-handed alpha
Helix 16
AB7
B
51 61Right-handed alpha
Helix 17
AB8
B
72 86Right-handed alpha
Helix 18
AB9
B
103 107Right-handed 310
Helix 19
AC1
B
118 122Right-handed 310
Helix 20
AC2
B
124 135Right-handed alpha
Helix 21
AC3
B
149 153Right-handed 310
Helix 22
AC4
B
154 168Right-handed alpha
Helix 23
AC5
B
171 184Right-handed alpha
Helix 24
AC6
B
187 202Right-handed alpha
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There are 2 sheets in PDB entry 5M58. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
65 70parallel
Strand 3
A
42 46parallel
Strand 4
A
110 116parallel
Strand 5
A
136 147parallel
Strand 6
A
220 227anti-parallel
Strand 7
A
204 212anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 94first strand
Strand 2
B
65 70parallel
Strand 3
B
42 46parallel
Strand 4
B
110 116parallel
Strand 5
B
136 146parallel
Strand 6
B
220 227anti-parallel
Strand 7
B
204 212anti-parallel
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