Analysis of interatomic Contacts of Structural Units in PDB entry:
5M5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M5C entry

There are 5 chains in PDB entry 5M5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 SER 1483PRO 1600
D
 ARG 2SER 439
E
 ARG 2ASP 437
A
 ARG 2SER 439
B
 ARG 2ASP 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 5M5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
1486 1495Right-handed alpha
Helix 2
AA2
C
1504 1518Right-handed alpha
Helix 3
AA3
D
10 27Right-handed alpha
Helix 4
AA4
D
72 81Right-handed alpha
Helix 5
AA5
D
102 108Right-handed alpha
Helix 6
AA6
D
110 113Right-handed 310
Helix 7
AA7
D
114 129Right-handed alpha
Helix 8
AA8
D
144 161Right-handed alpha
Helix 9
AA9
D
182 198Right-handed alpha
Helix 10
AB1
D
205 216Right-handed alpha
Helix 11
AB2
D
223 239Right-handed alpha
Helix 12
AB3
D
239 244Right-handed alpha
Helix 13
AB4
D
252 258Right-handed alpha
Helix 14
AB5
D
287 296Right-handed alpha
Helix 15
AB6
D
297 301Right-handed 310
Helix 16
AB7
D
306 310Right-handed 310
Helix 17
AB8
D
324 338Right-handed alpha
Helix 18
AB9
D
383 402Right-handed alpha
Helix 19
AC1
D
405 410Right-handed alpha
Helix 20
AC2
D
414 438Right-handed alpha
Helix 21
AC3
E
10 28Right-handed alpha
Helix 22
AC4
E
41 48Right-handed alpha
Helix 23
AC5
E
48 52Right-handed alpha
Helix 24
AC6
E
71 81Right-handed alpha
Helix 25
AC7
E
88 90Right-handed 310
Helix 26
AC8
E
102 108Right-handed alpha
Helix 27
AC9
E
111 129Right-handed alpha
Helix 28
AD1
E
143 161Right-handed alpha
Helix 29
AD2
E
182 198Right-handed alpha
Helix 30
AD3
E
205 216Right-handed alpha
Helix 31
AD4
E
223 244Right-handed alpha
Helix 32
AD5
E
251 260Right-handed alpha
Helix 33
AD6
E
278 282Right-handed 310
Helix 34
AD7
E
287 297Right-handed alpha
Helix 35
AD8
E
298 301Right-handed 310
Helix 36
AD9
E
324 339Right-handed alpha
Helix 37
AE1
E
340 343Right-handed 310
Helix 38
AE2
E
384 402Right-handed alpha
Helix 39
AE3
E
404 412Right-handed alpha
Helix 40
AE4
E
414 435Right-handed alpha
Helix 41
AE5
A
10 27Right-handed alpha
Helix 42
AE6
A
72 80Right-handed alpha
Helix 43
AE7
A
102 108Right-handed alpha
Helix 44
AE8
A
110 113Right-handed 310
Helix 45
AE9
A
114 129Right-handed alpha
Helix 46
AF1
A
144 161Right-handed alpha
Helix 47
AF2
A
182 198Right-handed alpha
Helix 48
AF3
A
205 216Right-handed alpha
Helix 49
AF4
A
223 244Right-handed alpha
Helix 50
AF5
A
252 259Right-handed alpha
Helix 51
AF6
A
287 296Right-handed alpha
Helix 52
AF7
A
297 301Right-handed 310
Helix 53
AF8
A
306 310Right-handed 310
Helix 54
AF9
A
324 338Right-handed alpha
Helix 55
AG1
A
383 401Right-handed alpha
Helix 56
AG2
A
405 410Right-handed alpha
Helix 57
AG3
A
414 438Right-handed alpha
Helix 58
AG4
B
10 28Right-handed alpha
Helix 59
AG5
B
41 48Right-handed alpha
Helix 60
AG6
B
48 52Right-handed alpha
Helix 61
AG7
B
71 81Right-handed alpha
Helix 62
AG8
B
88 90Right-handed 310
Helix 63
AG9
B
102 108Right-handed alpha
Helix 64
AH1
B
111 129Right-handed alpha
Helix 65
AH2
B
143 161Right-handed alpha
Helix 66
AH3
B
182 198Right-handed alpha
Helix 67
AH4
B
205 216Right-handed alpha
Helix 68
AH5
B
223 244Right-handed alpha
Helix 69
AH6
B
251 260Right-handed alpha
Helix 70
AH7
B
278 282Right-handed 310
Helix 71
AH8
B
287 297Right-handed alpha
Helix 72
AH9
B
298 301Right-handed 310
Helix 73
AI1
B
324 339Right-handed alpha
Helix 74
AI2
B
340 343Right-handed 310
Helix 75
AI3
B
384 402Right-handed alpha
Helix 76
AI4
B
404 412Right-handed alpha
Helix 77
AI5
B
414 435Right-handed alpha
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There are 11 sheets in PDB entry 5M5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1549 1552first strand
Strand 2
C
1534 1538anti-parallel
Strand 3
C
1524 1527anti-parallel
Strand 4
C
1590 1593parallel
Strand 5
C
1563 1570anti-parallel
Strand 6
C
1575 1579anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 93first strand
Strand 2
D
65 68parallel
Strand 3
D
3 9parallel
Strand 4
D
132 140parallel
Strand 5
D
165 171parallel
Strand 6
D
200 204parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 55first strand
Strand 2
D
61 63anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
269 272first strand
Strand 2
D
373 381anti-parallel
Strand 3
D
312 321anti-parallel
Strand 4
D
353 355parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
92 93first strand
Strand 2
E
65 68parallel
Strand 3
E
3 9parallel
Strand 4
E
132 140parallel
Strand 5
E
165 171parallel
Strand 6
E
200 204parallel
Strand 7
E
267 272parallel
Strand 8
E
373 381anti-parallel
Strand 9
E
312 321anti-parallel
Strand 10
E
351 356parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
53 56first strand
Strand 2
E
60 63anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
65 68parallel
Strand 3
A
3 9parallel
Strand 4
A
132 140parallel
Strand 5
A
165 171parallel
Strand 6
A
200 204parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 272first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
351 355parallel
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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
65 68parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 171parallel
Strand 6
B
200 204parallel
Strand 7
B
267 272parallel
Strand 8
B
373 381anti-parallel
Strand 9
B
312 321anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
60 63anti-parallel
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