Analysis of interatomic Contacts of Structural Units in PDB entry:
5M5E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M5E entry

There are 3 chains in PDB entry 5M5E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 6ALA 208
C
 LEU 33GLY 225
D
 SER 4THR 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5M5E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
99 103Right-handed 310
Helix 2
AA2
B
132 136Right-handed 310
Helix 3
AA3
C
98 100Right-handed 310
Helix 4
AA4
C
125 128Right-handed 310
Helix 5
AA5
C
157 161Right-handed 310
Helix 6
AA6
D
5 29Right-handed alpha
Helix 7
AA7
D
52 55Right-handed 310
Helix 8
AA8
D
56 61Right-handed alpha
Helix 9
AA9
D
62 73Right-handed alpha
Helix 10
AB1
D
81 98Right-handed alpha
Helix 11
AB2
D
113 133Right-handed alpha
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There are 8 sheets in PDB entry 5M5E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 12first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
57 63anti-parallel
Strand 4
B
51 52anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
33 39anti-parallel
Strand 3
B
78 86anti-parallel
Strand 4
B
89 98anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 117first strand
Strand 2
B
122 127anti-parallel
Strand 3
B
166 169anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 160first strand
Strand 2
B
139 146anti-parallel
Strand 3
B
177 186anti-parallel
Strand 4
B
201 204anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 86first strand
Strand 2
C
89 96anti-parallel
Strand 3
C
47 51anti-parallel
Strand 4
C
39 43anti-parallel
Strand 5
C
130 131parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 79first strand
Strand 2
C
64 69anti-parallel
Strand 3
C
106 111anti-parallel
Strand 4
C
119 124anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
136 144first strand
Strand 2
C
147 153anti-parallel
Strand 3
C
185 188anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 180first strand
Strand 2
C
162 169anti-parallel
Strand 3
C
197 204anti-parallel
Strand 4
C
222 224anti-parallel
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