Analysis of interatomic Contacts of Structural Units in PDB entry:
5M5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M5J entry

There are 2 chains in PDB entry 5M5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4MET 312
B
 THR 3GLU 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5M5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
42 47Right-handed 310
Helix 3
AA3
A
61 76Right-handed alpha
Helix 4
AA4
A
141 145Right-handed 310
Helix 5
AA5
A
156 167Right-handed alpha
Helix 6
AA6
A
185 194Right-handed alpha
Helix 7
AA7
A
282 285Right-handed 310
Helix 8
AA8
A
291 311Right-handed alpha
Helix 9
AA9
B
15 28Right-handed alpha
Helix 10
AB1
B
42 47Right-handed alpha
Helix 11
AB2
B
61 76Right-handed alpha
Helix 12
AB3
B
141 146Right-handed alpha
Helix 13
AB4
B
156 167Right-handed alpha
Helix 14
AB5
B
185 194Right-handed alpha
Helix 15
AB6
B
282 286Right-handed 310
Helix 16
AB7
B
291 314Right-handed alpha
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There are 12 sheets in PDB entry 5M5J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
32 35parallel
Strand 3
A
5 12parallel
Strand 4
A
103 112parallel
Strand 5
A
94 98anti-parallel
Strand 6
A
84 88anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
32 35parallel
Strand 3
A
5 12parallel
Strand 4
A
103 112parallel
Strand 5
A
278 280parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
59 60anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
243 245anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
236 239parallel
Strand 3
A
149 153parallel
Strand 4
A
172 176parallel
Strand 5
A
198 201parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 211first strand
Strand 2
A
216 223anti-parallel
Strand 3
A
229 232anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 80first strand
Strand 2
B
32 35parallel
Strand 3
B
5 12parallel
Strand 4
B
103 112parallel
Strand 5
B
94 98anti-parallel
Strand 6
B
84 88anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 80first strand
Strand 2
B
32 35parallel
Strand 3
B
5 12parallel
Strand 4
B
103 112parallel
Strand 5
B
278 280parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
59 60anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
244 245anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
236 239parallel
Strand 3
B
149 153parallel
Strand 4
B
172 176parallel
Strand 5
B
198 201parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 211first strand
Strand 2
B
216 223anti-parallel
Strand 3
B
229 233anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il