Analysis of interatomic Contacts of Structural Units in PDB entry:
5M5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M5Q entry

There is 1 chain in PDB entry 5M5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4LYS 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5M5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 43Right-handed alpha
Helix 2
AA2
A
44 47Right-handed 310
Helix 3
AA3
A
59 72Right-handed alpha
Helix 4
AA4
A
110 127Right-handed alpha
Helix 5
AA5
A
148 162Right-handed alpha
Helix 6
AA6
A
210 218Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5M5Q.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
183 188anti-parallel
Strand 3
A
166 170anti-parallel
Strand 4
A
132 139parallel
Strand 5
A
78 86anti-parallel
Strand 6
A
89 98anti-parallel
Strand 7
A
54 58parallel
Strand 8
A
225 229parallel
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