Analysis of interatomic Contacts of Structural Units in PDB entry:
5M5Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M5Y entry

There are 17 chains in PDB entry 5M5Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 1663
B	THR 13	LYS 1203
C	GLU 30	GLN 335
D	THR 12	PRO 100
E	ASP 2	MET 215
F	PRO 55	ASP 154
G	ASN 8	SER 251
H	ASN 3	ARG 146
I	SER 2	SER 65
J	MET 1	ARG 69
K	ASP 43	MET 142
L	LYS 28	ARG 70
M	SER 8	GLY 110
N	SER 24	ALA 177
R	G 4	C 10
S	A 52	C 70
T	G 1	T 25

There are143 helices in PDB entry 5M5Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	28	Right-handed alpha
Helix 2	AA2	A	87	101	Right-handed alpha
Helix 3	AA3	A	113	125	Right-handed alpha
Helix 4	AA4	A	132	138	Right-handed alpha
Helix 5	AA5	A	175	199	Right-handed alpha
Helix 6	AA6	A	209	225	Right-handed alpha
Helix 7	AA7	A	226	230	Right-handed 310
Helix 8	AA8	A	257	267	Right-handed alpha
Helix 9	AA9	A	316	331	Right-handed alpha
Helix 10	AB1	A	331	339	Right-handed alpha
Helix 11	AB2	A	351	355	Right-handed 310
Helix 12	AB3	A	364	368	Right-handed 310
Helix 13	AB4	A	381	398	Right-handed alpha
Helix 14	AB5	A	398	405	Right-handed alpha
Helix 15	AB6	A	418	435	Right-handed alpha
Helix 16	AB7	A	465	469	Right-handed 310
Helix 17	AB8	A	498	505	Right-handed alpha
Helix 18	AB9	A	515	526	Right-handed alpha
Helix 19	AC1	A	550	560	Right-handed alpha
Helix 20	AC2	A	567	572	Right-handed alpha
Helix 21	AC3	A	596	600	Right-handed 310
Helix 22	AC4	A	617	625	Right-handed alpha
Helix 23	AC5	A	640	650	Right-handed alpha
Helix 24	AC6	A	671	681	Right-handed alpha
Helix 25	AC7	A	688	701	Right-handed alpha
Helix 26	AC8	A	727	740	Right-handed alpha
Helix 27	AC9	A	756	761	Right-handed 310
Helix 28	AD1	A	792	801	Right-handed alpha
Helix 29	AD2	A	802	824	Right-handed alpha
Helix 30	AD3	A	829	833	Right-handed 310
Helix 31	AD4	A	836	847	Right-handed alpha
Helix 32	AD5	A	852	862	Right-handed alpha
Helix 33	AD6	A	872	883	Right-handed alpha
Helix 34	AD7	A	886	891	Right-handed alpha
Helix 35	AD8	A	892	911	Right-handed alpha
Helix 36	AD9	A	923	931	Right-handed alpha
Helix 37	AE1	A	936	945	Right-handed alpha
Helix 38	AE2	A	991	1027	Right-handed alpha
Helix 39	AE3	A	1049	1053	Right-handed 310
Helix 40	AE4	A	1065	1072	Right-handed alpha
Helix 41	AE5	A	1072	1081	Right-handed alpha
Helix 42	AE6	A	1082	1086	Right-handed 310
Helix 43	AE7	A	1091	1109	Right-handed alpha
Helix 44	AE8	A	1112	1116	Right-handed 310
Helix 45	AE9	A	1122	1127	Right-handed alpha
Helix 46	AF1	A	1138	1150	Right-handed alpha
Helix 47	AF2	A	1163	1176	Right-handed alpha
Helix 48	AF3	A	1185	1193	Right-handed alpha
Helix 49	AF4	A	1196	1201	Right-handed alpha
Helix 50	AF5	A	1218	1227	Right-handed alpha
Helix 51	AF6	A	1247	1259	Right-handed alpha
Helix 52	AF7	A	1262	1267	Right-handed 310
Helix 53	AF8	A	1298	1305	Right-handed alpha
Helix 54	AF9	A	1309	1320	Right-handed alpha
Helix 55	AG1	A	1320	1337	Right-handed alpha
Helix 56	AG2	A	1440	1453	Right-handed alpha
Helix 57	AG3	A	1477	1481	Right-handed 310
Helix 58	AG4	A	1485	1496	Right-handed alpha
Helix 59	AG5	A	1547	1553	Right-handed alpha
Helix 60	AG6	A	1554	1572	Right-handed alpha
Helix 61	AG7	A	1578	1590	Right-handed alpha
Helix 62	AG8	A	1599	1604	Right-handed alpha
Helix 63	AG9	A	1608	1616	Right-handed alpha
Helix 64	AH1	A	1617	1629	Right-handed alpha
Helix 65	AH2	A	1649	1653	Right-handed 310
Helix 66	AH3	B	18	27	Right-handed alpha
Helix 67	AH4	B	35	41	Right-handed alpha
Helix 68	AH5	B	42	52	Right-handed alpha
Helix 69	AH6	B	55	57	Right-handed 310
Helix 70	AH7	B	58	67	Right-handed alpha
Helix 71	AH8	B	86	90	Right-handed alpha
Helix 72	AH9	B	122	129	Right-handed alpha
Helix 73	AI1	B	180	184	Right-handed 310
Helix 74	AI2	B	220	224	Right-handed 310
Helix 75	AI3	B	272	278	Right-handed alpha
Helix 76	AI4	B	286	292	Right-handed alpha
Helix 77	AI5	B	302	314	Right-handed alpha
Helix 78	AI6	B	324	334	Right-handed alpha
Helix 79	AI7	B	345	357	Right-handed alpha
Helix 80	AI8	B	359	363	Right-handed 310
Helix 81	AI9	B	365	368	Right-handed 310
Helix 82	AJ1	B	369	386	Right-handed alpha
Helix 83	AJ2	B	405	417	Right-handed alpha
Helix 84	AJ3	B	418	429	Right-handed alpha
Helix 85	AJ4	B	430	435	Right-handed alpha
Helix 86	AJ5	B	442	453	Right-handed alpha
Helix 87	AJ6	B	457	468	Right-handed alpha
Helix 88	AJ7	B	493	500	Right-handed alpha
Helix 89	AJ8	B	506	512	Right-handed alpha
Helix 90	AJ9	B	521	525	Right-handed 310
Helix 91	AK1	B	560	566	Right-handed alpha
Helix 92	AK2	B	598	614	Right-handed alpha
Helix 93	AK3	B	665	669	Right-handed 310
Helix 94	AK4	B	711	723	Right-handed alpha
Helix 95	AK5	B	732	736	Right-handed 310
Helix 96	AK6	B	754	760	Right-handed alpha
Helix 97	AK7	B	761	765	Right-handed 310
Helix 98	AK8	B	790	796	Right-handed alpha
Helix 99	AK9	B	932	936	Right-handed 310
Helix 100	AL1	B	953	958	Right-handed alpha
Helix 101	AL2	B	960	976	Right-handed alpha
Helix 102	AL3	B	991	1004	Right-handed alpha
Helix 103	AL4	B	1072	1082	Right-handed alpha
Helix 104	AL5	B	1084	1093	Right-handed alpha
Helix 105	AL6	B	1180	1192	Right-handed alpha
Helix 106	AL7	C	32	40	Right-handed alpha
Helix 107	AL8	C	60	74	Right-handed alpha
Helix 108	AL9	C	93	103	Right-handed alpha
Helix 109	AM1	C	152	156	Right-handed alpha
Helix 110	AM2	C	241	251	Right-handed alpha
Helix 111	AM3	C	277	281	Right-handed 310
Helix 112	AM4	C	311	313	Right-handed 310
Helix 113	AM5	C	314	330	Right-handed alpha
Helix 114	AM6	D	33	48	Right-handed alpha
Helix 115	AM7	D	82	96	Right-handed alpha
Helix 116	AM8	E	4	27	Right-handed alpha
Helix 117	AM9	E	31	36	Right-handed alpha
Helix 118	AN1	E	38	46	Right-handed alpha
Helix 119	AN2	E	54	59	Right-handed alpha
Helix 120	AN3	E	65	72	Right-handed alpha
Helix 121	AN4	E	89	103	Right-handed alpha
Helix 122	AN5	E	117	123	Right-handed 310
Helix 123	AN6	E	143	147	Right-handed 310
Helix 124	AN7	E	157	168	Right-handed alpha
Helix 125	AN8	E	171	175	Right-handed 310
Helix 126	AN9	E	182	189	Right-handed alpha
Helix 127	AO1	F	56	72	Right-handed alpha
Helix 128	AO2	F	86	102	Right-handed alpha
Helix 129	AO3	F	116	127	Right-handed alpha
Helix 130	AO4	F	149	151	Right-handed 310
Helix 131	AO5	G	15	20	Right-handed alpha
Helix 132	AO6	G	50	54	Right-handed 310
Helix 133	AO7	G	56	65	Right-handed alpha
Helix 134	AO8	G	66	70	Right-handed 310
Helix 135	AO9	H	88	93	Right-handed 310
Helix 136	AP1	H	129	133	Right-handed 310
Helix 137	AP2	I	59	64	Right-handed alpha
Helix 138	AP3	J	18	27	Right-handed alpha
Helix 139	AP4	J	31	39	Right-handed alpha
Helix 140	AP5	J	43	51	Right-handed alpha
Helix 141	AP6	J	56	61	Right-handed alpha
Helix 142	AP7	K	69	81	Right-handed alpha
Helix 143	AP8	K	112	140	Right-handed alpha

There are 44 sheets in PDB entry 5M5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1631	1632	first strand
Strand 2	A	10	15	anti-parallel
Strand 3	B	1197	1201	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	252	253	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	373	first strand
Strand 2	A	376	378	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	495	first strand
Strand 2	A	601	605	parallel
Strand 3	A	586	590	anti-parallel
Strand 4	A	632	636	anti-parallel
Strand 5	A	479	483	anti-parallel
Strand 6	B	1045	1047	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	543	545	first strand
Strand 2	A	535	537	anti-parallel
Strand 3	A	576	578	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	750	752	first strand
Strand 2	A	768	771	anti-parallel
Strand 3	A	776	778	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1031	1033	first strand
Strand 2	A	1037	1039	anti-parallel
Strand 3	A	1045	1047	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1504	1507	first strand
Strand 2	A	1520	1523	anti-parallel
Strand 3	A	1238	1239	anti-parallel
Strand 4	A	1542	1543	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1457	1460	first strand
Strand 2	A	1471	1476	anti-parallel
Strand 3	A	1288	1295	anti-parallel
Strand 4	A	1269	1273	anti-parallel
Strand 5	I	48	50	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1592	1593	first strand
Strand 2	E	177	179	parallel
Strand 3	E	206	215	parallel
Strand 4	E	195	202	anti-parallel
Strand 5	E	152	155	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	24	first strand
Strand 2	G	38	47	anti-parallel
Strand 3	G	114	125	anti-parallel
Strand 4	G	79	81	anti-parallel
Strand 5	G	73	74	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	147	first strand
Strand 2	F	132	135	anti-parallel
Strand 3	A	1655	1660	anti-parallel
Strand 4	G	103	107	anti-parallel
Strand 5	G	114	125	anti-parallel
Strand 6	G	85	89	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	74	first strand
Strand 2	B	94	97	anti-parallel
Strand 3	B	143	145	anti-parallel
Strand 4	B	150	152	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	104	first strand
Strand 2	B	137	141	anti-parallel
Strand 3	B	155	156	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	485	487	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	209	first strand
Strand 2	B	400	403	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	218	first strand
Strand 2	B	229	237	anti-parallel
Strand 3	B	247	253	anti-parallel
Strand 4	B	258	261	anti-parallel
Strand 5	B	270	271	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	592	597	first strand
Strand 2	B	583	587	anti-parallel
Strand 3	B	639	642	parallel
Strand 4	B	626	629	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	660	664	first strand
Strand 2	B	651	655	anti-parallel
Strand 3	B	688	689	anti-parallel
Strand 4	B	674	675	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	740	744	first strand
Strand 2	B	801	809	anti-parallel
Strand 3	B	901	907	anti-parallel
Strand 4	B	880	888	anti-parallel
Strand 5	B	851	852	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	740	744	first strand
Strand 2	B	801	809	anti-parallel
Strand 3	B	901	907	anti-parallel
Strand 4	B	880	888	anti-parallel
Strand 5	L	55	58	anti-parallel
Strand 6	L	29	30	anti-parallel
Strand 7	L	37	38	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	769	775	first strand
Strand 2	B	1026	1035	anti-parallel
Strand 3	B	917	918	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	769	775	first strand
Strand 2	B	1026	1035	anti-parallel
Strand 3	B	1010	1011	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	788	789	first strand
Strand 2	B	947	948	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	823	824	first strand
Strand 2	B	857	863	anti-parallel
Strand 3	B	869	873	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	938	939	first strand
Strand 2	B	1013	1014	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1098	1104	first strand
Strand 2	B	1173	1179	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1113	1114	first strand
Strand 2	B	1127	1128	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1133	1134	first strand
Strand 2	B	1166	1168	anti-parallel
Strand 3	B	1159	1160	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	51	57	anti-parallel
Strand 3	C	289	304	anti-parallel
Strand 4	C	222	235	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	132	139	anti-parallel
Strand 3	C	201	204	anti-parallel
Strand 4	C	77	88	anti-parallel
Strand 5	L	65	68	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	132	139	anti-parallel
Strand 3	C	207	211	anti-parallel
Strand 4	C	77	88	anti-parallel
Strand 5	L	65	68	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	157	158	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	162	first strand
Strand 2	C	194	195	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	257	first strand
Strand 2	C	266	267	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	62	first strand
Strand 2	E	78	82	anti-parallel
Strand 3	E	107	112	parallel
Strand 4	E	131	136	parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	135	first strand
Strand 2	G	229	237	anti-parallel
Strand 3	G	244	248	anti-parallel
Strand 4	G	153	156	parallel
Strand 5	G	145	149	anti-parallel
Strand 6	G	139	140	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	167	170	first strand
Strand 2	G	215	218	anti-parallel

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There are 9 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	97	first strand
Strand 2	H	141	144	anti-parallel
Strand 3	H	56	60	anti-parallel
Strand 4	H	4	16	anti-parallel
Strand 5	H	23	30	anti-parallel
Strand 6	H	37	43	anti-parallel
Strand 7	H	122	125	anti-parallel
Strand 8	H	112	117	anti-parallel
Strand 9	H	100	106	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	4	first strand
Strand 2	I	7	10	anti-parallel
Strand 3	I	15	16	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	47	49	first strand
Strand 2	K	60	66	anti-parallel
Strand 3	K	100	107	anti-parallel
Strand 4	K	86	92	anti-parallel

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There are 7 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	30	31	first strand
Strand 2	M	38	42	anti-parallel
Strand 3	M	52	56	anti-parallel
Strand 4	M	61	65	anti-parallel
Strand 5	M	95	101	anti-parallel
Strand 6	M	22	25	parallel
Strand 7	N	108	110	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	74	81	first strand
Strand 2	N	52	59	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	88	92	first strand
Strand 2	N	136	140	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 5M5Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M5Y