Analysis of interatomic Contacts of Structural Units in PDB entry:
5M60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M60 entry

There is 1 chain in PDB entry 5M60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 30SER 783
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5M60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 39Right-handed alpha
Helix 2
AA2
A
60 63Right-handed 310
Helix 3
AA3
A
72 82Right-handed alpha
Helix 4
AA4
A
157 161Right-handed 310
Helix 5
AA5
A
205 209Right-handed 310
Helix 6
AA6
A
384 388Right-handed 310
Helix 7
AA7
A
407 409Right-handed 310
Helix 8
AA8
A
415 418Right-handed 310
Helix 9
AA9
A
427 438Right-handed alpha
Helix 10
AB1
A
551 556Right-handed alpha
Helix 11
AB2
A
566 570Right-handed 310
Helix 12
AB3
A
599 603Right-handed 310
Helix 13
AB4
A
671 675Right-handed 310
Helix 14
AB5
A
678 683Right-handed alpha
Helix 15
AB6
A
688 692Right-handed 310
Helix 16
AB7
A
722 727Right-handed alpha
Helix 17
AB8
A
768 770Right-handed 310
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There are 8 sheets in PDB entry 5M60. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
98 102parallel
Strand 3
A
119 123parallel
Strand 4
A
164 167parallel
Strand 5
A
192 195parallel
Strand 6
A
223 225parallel
Strand 7
A
242 246parallel
Strand 8
A
264 268parallel
Strand 9
A
293 297parallel
Strand 10
A
322 326parallel
Strand 11
A
355 361anti-parallel
Strand 12
A
372 378anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
129 133parallel
Strand 3
A
169 172parallel
Strand 4
A
197 200parallel
Strand 5
A
227 230parallel
Strand 6
A
248 251parallel
Strand 7
A
270 273parallel
Strand 8
A
300 302parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 310first strand
Strand 2
A
337 339parallel
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There are 11 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 413first strand
Strand 2
A
443 446parallel
Strand 3
A
462 467parallel
Strand 4
A
501 505parallel
Strand 5
A
533 536parallel
Strand 6
A
584 587parallel
Strand 7
A
623 626parallel
Strand 8
A
646 649parallel
Strand 9
A
704 709parallel
Strand 10
A
742 746parallel
Strand 11
A
780 782anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 453first strand
Strand 2
A
471 475parallel
Strand 3
A
507 511parallel
Strand 4
A
538 542parallel
Strand 5
A
589 593parallel
Strand 6
A
628 631parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 459first strand
Strand 2
A
491 493parallel
Strand 3
A
521 523parallel
Strand 4
A
576 578parallel
Strand 5
A
615 619parallel
Strand 6
A
638 643parallel
Strand 7
A
698 701parallel
Strand 8
A
735 738parallel
Strand 9
A
757 759parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
651 654first strand
Strand 2
A
711 714parallel
Strand 3
A
748 751parallel
Strand 4
A
776 778anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 240first strand
Strand 2
A
257 262parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il