Analysis of interatomic Contacts of Structural Units in PDB entry:
5M62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M62 entry

There are 2 chains in PDB entry 5M62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 192VAL 327
B
 ALA 192VAL 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5M62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
193 199Right-handed alpha
Helix 2
AA2
A
218 229Right-handed alpha
Helix 3
AA3
A
238 249Right-handed alpha
Helix 4
AA4
A
276 281Right-handed alpha
Helix 5
AA5
A
291 295Right-handed 310
Helix 6
AA6
B
193 199Right-handed alpha
Helix 7
AA7
B
218 229Right-handed alpha
Helix 8
AA8
B
238 249Right-handed alpha
Helix 9
AA9
B
276 281Right-handed alpha
Helix 10
AB1
B
282 284Right-handed 310
Helix 11
AB2
B
291 295Right-handed 310
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There are 4 sheets in PDB entry 5M62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
208 212anti-parallel
Strand 3
A
319 325anti-parallel
Strand 4
A
254 260parallel
Strand 5
A
267 269anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
319 325anti-parallel
Strand 3
A
254 260parallel
Strand 4
A
298 301anti-parallel
Strand 5
A
309 312anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 205first strand
Strand 2
B
208 212anti-parallel
Strand 3
B
319 325anti-parallel
Strand 4
B
254 260parallel
Strand 5
B
267 269anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
319 325anti-parallel
Strand 3
B
254 260parallel
Strand 4
B
298 301anti-parallel
Strand 5
B
309 312anti-parallel
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