Analysis of interatomic Contacts of Structural Units in PDB entry:
5M63

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M63 entry

There are 4 chains in PDB entry 5M63 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 20	PRO 241
L	VAL 24	CYS 238
M	GLN 20	SER 245
N	VAL 24	ALA 239

There are 14 helices in PDB entry 5M63. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	105	109	Right-handed 310
Helix 2	AA2	H	187	189	Right-handed 310
Helix 3	AA3	H	229	232	Right-handed 310
Helix 4	AA4	L	51	55	Right-handed 310
Helix 5	AA5	L	103	107	Right-handed 310
Helix 6	AA6	L	149	154	Right-handed alpha
Helix 7	AA7	L	209	213	Right-handed alpha
Helix 8	AA8	M	105	109	Right-handed 310
Helix 9	AA9	M	187	189	Right-handed 310
Helix 10	AB1	M	229	232	Right-handed 310
Helix 11	AB2	N	51	55	Right-handed 310
Helix 12	AB3	N	103	107	Right-handed 310
Helix 13	AB4	N	149	154	Right-handed alpha
Helix 14	AB5	N	209	213	Right-handed alpha

There are 22 sheets in PDB entry 5M63. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	21	25	first strand
Strand 2	H	36	43	anti-parallel
Strand 3	H	96	101	anti-parallel
Strand 4	H	88	91	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	30	first strand
Strand 2	H	138	142	parallel
Strand 3	H	110	121	anti-parallel
Strand 4	H	51	57	anti-parallel
Strand 5	H	63	70	anti-parallel
Strand 6	H	76	79	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	30	first strand
Strand 2	H	138	142	parallel
Strand 3	H	110	121	anti-parallel
Strand 4	H	124	134	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	155	first strand
Strand 2	H	167	176	anti-parallel
Strand 3	H	207	215	anti-parallel
Strand 4	H	194	196	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	155	first strand
Strand 2	H	167	176	anti-parallel
Strand 3	H	207	215	anti-parallel
Strand 4	H	200	201	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	182	185	first strand
Strand 2	H	222	228	anti-parallel
Strand 3	H	233	239	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	26	29	first strand
Strand 2	L	40	47	anti-parallel
Strand 3	L	94	100	anti-parallel
Strand 4	L	86	91	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	32	36	first strand
Strand 2	L	129	134	parallel
Strand 3	L	108	115	anti-parallel
Strand 4	L	57	62	anti-parallel
Strand 5	L	69	73	anti-parallel
Strand 6	L	77	78	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	32	36	first strand
Strand 2	L	129	134	parallel
Strand 3	L	108	115	anti-parallel
Strand 4	L	123	125	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	141	145	first strand
Strand 2	L	156	166	anti-parallel
Strand 3	L	199	208	anti-parallel
Strand 4	L	185	189	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	179	180	first strand
Strand 2	L	171	176	anti-parallel
Strand 3	L	217	224	anti-parallel
Strand 4	L	227	234	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	21	25	first strand
Strand 2	M	36	43	anti-parallel
Strand 3	M	96	101	anti-parallel
Strand 4	M	88	93	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	29	30	first strand
Strand 2	M	138	142	parallel
Strand 3	M	110	121	anti-parallel
Strand 4	M	51	57	anti-parallel
Strand 5	M	63	70	anti-parallel
Strand 6	M	76	79	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	29	30	first strand
Strand 2	M	138	142	parallel
Strand 3	M	110	121	anti-parallel
Strand 4	M	124	134	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	151	155	first strand
Strand 2	M	167	176	anti-parallel
Strand 3	M	207	215	anti-parallel
Strand 4	M	195	196	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	151	155	first strand
Strand 2	M	167	176	anti-parallel
Strand 3	M	207	215	anti-parallel
Strand 4	M	200	201	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	182	185	first strand
Strand 2	M	222	228	anti-parallel
Strand 3	M	233	239	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	26	29	first strand
Strand 2	N	40	47	anti-parallel
Strand 3	N	94	100	anti-parallel
Strand 4	N	86	91	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	32	36	first strand
Strand 2	N	129	134	parallel
Strand 3	N	108	115	anti-parallel
Strand 4	N	57	62	anti-parallel
Strand 5	N	69	73	anti-parallel
Strand 6	N	77	78	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	32	36	first strand
Strand 2	N	129	134	parallel
Strand 3	N	108	115	anti-parallel
Strand 4	N	123	125	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	141	145	first strand
Strand 2	N	156	166	anti-parallel
Strand 3	N	199	208	anti-parallel
Strand 4	N	185	189	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	179	180	first strand
Strand 2	N	171	176	anti-parallel
Strand 3	N	217	224	anti-parallel
Strand 4	N	227	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M63

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M63