Analysis of interatomic Contacts of Structural Units in PDB entry:
5M65


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M65 entry

There are 2 chains in PDB entry 5M65 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5TYR 473
B
 GLY 6TYR 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 5M65. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 16Right-handed 310
Helix 2
AA2
A
17 32Right-handed alpha
Helix 3
AA3
A
32 43Right-handed alpha
Helix 4
AA4
A
60 73Right-handed alpha
Helix 5
AA5
A
88 98Right-handed alpha
Helix 6
AA6
A
109 120Right-handed alpha
Helix 7
AA7
A
137 152Right-handed alpha
Helix 8
AA8
A
155 159Right-handed 310
Helix 9
AA9
A
162 179Right-handed alpha
Helix 10
AB1
A
182 191Right-handed alpha
Helix 11
AB2
A
198 211Right-handed alpha
Helix 12
AB3
A
224 229Right-handed alpha
Helix 13
AB4
A
230 249Right-handed alpha
Helix 14
AB5
A
263 276Right-handed alpha
Helix 15
AB6
A
286 296Right-handed alpha
Helix 16
AB7
A
302 307Right-handed alpha
Helix 17
AB8
A
324 331Right-handed alpha
Helix 18
AB9
A
343 347Right-handed 310
Helix 19
AC1
A
348 353Right-handed alpha
Helix 20
AC2
A
380 382Right-handed 310
Helix 21
AC3
A
383 389Right-handed alpha
Helix 22
AC4
A
393 414Right-handed alpha
Helix 23
AC5
A
428 438Right-handed alpha
Helix 24
AC6
A
439 444Right-handed alpha
Helix 25
AC7
A
451 459Right-handed alpha
Helix 26
AC8
B
14 16Right-handed 310
Helix 27
AC9
B
17 32Right-handed alpha
Helix 28
AD1
B
32 43Right-handed alpha
Helix 29
AD2
B
60 73Right-handed alpha
Helix 30
AD3
B
88 98Right-handed alpha
Helix 31
AD4
B
109 120Right-handed alpha
Helix 32
AD5
B
137 151Right-handed alpha
Helix 33
AD6
B
154 159Right-handed 310
Helix 34
AD7
B
162 179Right-handed alpha
Helix 35
AD8
B
182 191Right-handed alpha
Helix 36
AD9
B
198 211Right-handed alpha
Helix 37
AE1
B
224 229Right-handed alpha
Helix 38
AE2
B
230 249Right-handed alpha
Helix 39
AE3
B
263 276Right-handed alpha
Helix 40
AE4
B
286 296Right-handed alpha
Helix 41
AE5
B
302 307Right-handed alpha
Helix 42
AE6
B
324 331Right-handed alpha
Helix 43
AE7
B
343 347Right-handed 310
Helix 44
AE8
B
349 353Right-handed 310
Helix 45
AE9
B
380 382Right-handed 310
Helix 46
AF1
B
383 389Right-handed alpha
Helix 47
AF2
B
393 414Right-handed alpha
Helix 48
AF3
B
428 438Right-handed alpha
Helix 49
AF4
B
439 444Right-handed alpha
Helix 50
AF5
B
451 459Right-handed alpha
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There are 4 sheets in PDB entry 5M65. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
102 104parallel
Strand 3
A
76 80parallel
Strand 4
A
52 56parallel
Strand 5
A
131 134parallel
Strand 6
A
194 196parallel
Strand 7
A
218 220parallel
Strand 8
A
424 425parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
279 283parallel
Strand 3
A
256 260parallel
Strand 4
A
312 315parallel
Strand 5
A
335 339parallel
Strand 6
A
374 378parallel
Strand 7
A
364 368anti-parallel
Strand 8
A
356 361anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
102 104parallel
Strand 3
B
76 80parallel
Strand 4
B
52 56parallel
Strand 5
B
131 134parallel
Strand 6
B
194 196parallel
Strand 7
B
218 220parallel
Strand 8
B
424 425parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 300first strand
Strand 2
B
279 283parallel
Strand 3
B
256 260parallel
Strand 4
B
312 315parallel
Strand 5
B
335 339parallel
Strand 6
B
374 378parallel
Strand 7
B
364 368anti-parallel
Strand 8
B
356 361anti-parallel
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