Analysis of interatomic Contacts of Structural Units in PDB entry:
5M6B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M6B entry

There are 3 chains in PDB entry 5M6B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 3	THR 557
A	LEU 3	GLY 558
C	LEU 3	GLU 248

There are 68 helices in PDB entry 5M6B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	18	23	Right-handed alpha
Helix 2	AA2	B	25	42	Right-handed alpha
Helix 3	AA3	B	49	58	Right-handed alpha
Helix 4	AA4	B	86	111	Right-handed alpha
Helix 5	AA5	B	118	126	Right-handed alpha
Helix 6	AA6	B	175	179	Right-handed 310
Helix 7	AA7	B	201	226	Right-handed alpha
Helix 8	AA8	B	230	235	Right-handed alpha
Helix 9	AA9	B	246	260	Right-handed alpha
Helix 10	AB1	B	272	276	Right-handed 310
Helix 11	AB2	B	278	297	Right-handed alpha
Helix 12	AB3	B	340	348	Right-handed 310
Helix 13	AB4	B	352	356	Right-handed 310
Helix 14	AB5	B	362	378	Right-handed alpha
Helix 15	AB6	B	388	398	Right-handed alpha
Helix 16	AB7	B	479	487	Right-handed alpha
Helix 17	AB8	B	491	502	Right-handed alpha
Helix 18	AB9	A	18	23	Right-handed alpha
Helix 19	AC1	A	25	42	Right-handed alpha
Helix 20	AC2	A	49	55	Right-handed alpha
Helix 21	AC3	A	86	111	Right-handed alpha
Helix 22	AC4	A	118	126	Right-handed alpha
Helix 23	AC5	A	175	179	Right-handed 310
Helix 24	AC6	A	201	226	Right-handed alpha
Helix 25	AC7	A	230	235	Right-handed alpha
Helix 26	AC8	A	246	260	Right-handed alpha
Helix 27	AC9	A	272	276	Right-handed 310
Helix 28	AD1	A	277	297	Right-handed alpha
Helix 29	AD2	A	340	348	Right-handed 310
Helix 30	AD3	A	352	356	Right-handed 310
Helix 31	AD4	A	362	378	Right-handed alpha
Helix 32	AD5	A	388	398	Right-handed alpha
Helix 33	AD6	A	479	487	Right-handed alpha
Helix 34	AD7	A	491	502	Right-handed alpha
Helix 35	AD8	C	18	23	Right-handed alpha
Helix 36	AD9	C	25	41	Right-handed alpha
Helix 37	AE1	C	49	58	Right-handed alpha
Helix 38	AE2	C	86	108	Right-handed alpha
Helix 39	AE3	C	122	127	Right-handed 310
Helix 40	AE4	C	201	212	Right-handed alpha
Helix 41	AE5	C	212	226	Right-handed alpha
Helix 42	AE6	C	230	235	Right-handed alpha
Helix 43	AE7	C	246	260	Right-handed alpha
Helix 44	AE8	C	278	297	Right-handed alpha
Helix 45	AE9	C	340	348	Right-handed 310
Helix 46	AF1	C	352	356	Right-handed 310
Helix 47	AF2	C	362	378	Right-handed alpha
Helix 48	AF3	C	388	398	Right-handed alpha
Helix 49	AF4	C	479	487	Right-handed alpha
Helix 50	AF5	C	491	502	Right-handed alpha
Helix 51	AF6	D	18	23	Right-handed alpha
Helix 52	AF7	D	25	42	Right-handed alpha
Helix 53	AF8	D	49	58	Right-handed alpha
Helix 54	AF9	D	86	111	Right-handed alpha
Helix 55	AG1	D	118	126	Right-handed alpha
Helix 56	AG2	D	175	179	Right-handed 310
Helix 57	AG3	D	201	212	Right-handed alpha
Helix 58	AG4	D	212	226	Right-handed alpha
Helix 59	AG5	D	230	235	Right-handed alpha
Helix 60	AG6	D	246	260	Right-handed alpha
Helix 61	AG7	D	272	276	Right-handed 310
Helix 62	AG8	D	278	297	Right-handed alpha
Helix 63	AG9	D	340	348	Right-handed 310
Helix 64	AH1	D	352	356	Right-handed 310
Helix 65	AH2	D	362	378	Right-handed alpha
Helix 66	AH3	D	388	398	Right-handed alpha
Helix 67	AH4	D	479	487	Right-handed alpha
Helix 68	AH5	D	491	501	Right-handed alpha

There are 28 sheets in PDB entry 5M6B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	15	first strand
Strand 2	B	350	351	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	153	first strand
Strand 2	B	159	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	306	first strand
Strand 2	B	319	320	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	332	first strand
Strand 2	B	335	336	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	478	first strand
Strand 2	B	408	420	anti-parallel
Strand 3	B	521	531	anti-parallel
Strand 4	B	539	540	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	478	first strand
Strand 2	B	408	420	anti-parallel
Strand 3	B	521	531	anti-parallel
Strand 4	B	547	549	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	452	first strand
Strand 2	B	428	434	anti-parallel
Strand 3	B	504	510	anti-parallel
Strand 4	B	554	555	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	A	350	351	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	153	first strand
Strand 2	A	159	163	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	306	first strand
Strand 2	A	319	320	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	332	first strand
Strand 2	A	335	336	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	478	first strand
Strand 2	A	408	420	anti-parallel
Strand 3	A	521	531	anti-parallel
Strand 4	A	539	540	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	478	first strand
Strand 2	A	408	420	anti-parallel
Strand 3	A	521	531	anti-parallel
Strand 4	A	547	549	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	452	first strand
Strand 2	A	429	434	anti-parallel
Strand 3	A	504	509	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	15	first strand
Strand 2	C	350	351	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	152	first strand
Strand 2	C	160	163	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	306	first strand
Strand 2	C	319	320	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	332	first strand
Strand 2	C	335	337	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	472	478	first strand
Strand 2	C	408	420	anti-parallel
Strand 3	C	521	531	anti-parallel
Strand 4	C	539	540	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	472	478	first strand
Strand 2	C	408	420	anti-parallel
Strand 3	C	521	531	anti-parallel
Strand 4	C	547	549	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	449	452	first strand
Strand 2	C	429	433	anti-parallel
Strand 3	C	505	509	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	15	first strand
Strand 2	D	350	351	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	153	first strand
Strand 2	D	159	163	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	306	first strand
Strand 2	D	319	320	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	332	first strand
Strand 2	D	335	336	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	472	478	first strand
Strand 2	D	408	420	anti-parallel
Strand 3	D	521	531	anti-parallel
Strand 4	D	539	540	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	472	478	first strand
Strand 2	D	408	420	anti-parallel
Strand 3	D	521	531	anti-parallel
Strand 4	D	547	549	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	447	452	first strand
Strand 2	D	428	433	anti-parallel
Strand 3	D	505	510	anti-parallel
Strand 4	D	554	555	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M6B

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M6B