Analysis of interatomic Contacts of Structural Units in PDB entry:
5M6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M6D entry

There are 4 chains in PDB entry 5M6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 10SER 170
A
 THR 172LYS 355
B
 VAL 22SER 170
B
 THR 172TYR 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5M6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 20Right-handed alpha
Helix 2
AA2
A
31 42Right-handed alpha
Helix 3
AA3
A
57 67Right-handed alpha
Helix 4
AA4
A
99 103Right-handed 310
Helix 5
AA5
A
104 109Right-handed 310
Helix 6
AA6
A
122 127Right-handed alpha
Helix 7
AA7
A
128 131Right-handed 310
Helix 8
AA8
A
155 159Right-handed 310
Helix 9
AA9
A
170 187Right-handed alpha
Helix 10
AB1
A
236 240Right-handed 310
Helix 11
AB2
A
241 245Right-handed 310
Helix 12
AB3
A
274 285Right-handed alpha
Helix 13
AB4
A
298 303Right-handed 310
Helix 14
AB5
A
314 316Right-handed 310
Helix 15
AB6
A
336 353Right-handed alpha
Helix 16
AB7
B
31 42Right-handed alpha
Helix 17
AB8
B
57 67Right-handed alpha
Helix 18
AB9
B
99 103Right-handed 310
Helix 19
AC1
B
104 109Right-handed 310
Helix 20
AC2
B
122 127Right-handed alpha
Helix 21
AC3
B
127 132Right-handed alpha
Helix 22
AC4
B
155 159Right-handed 310
Helix 23
AC5
B
170 187Right-handed alpha
Helix 24
AC6
B
236 240Right-handed 310
Helix 25
AC7
B
241 245Right-handed 310
Helix 26
AC8
B
274 285Right-handed alpha
Helix 27
AC9
B
298 302Right-handed 310
Helix 28
AD1
B
314 316Right-handed 310
Helix 29
AD2
B
336 353Right-handed alpha
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There are 6 sheets in PDB entry 5M6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
84 87anti-parallel
Strand 3
A
90 95anti-parallel
Strand 4
A
47 53parallel
Strand 5
A
23 28parallel
Strand 6
A
112 115parallel
Strand 7
A
136 139parallel
Strand 8
A
165 167parallel
Strand 9
A
148 149parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
248 255anti-parallel
Strand 3
A
189 199parallel
Strand 4
A
261 269anti-parallel
Strand 5
A
324 333anti-parallel
Strand 6
A
309 312anti-parallel
Strand 7
A
290 293parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
248 255anti-parallel
Strand 3
A
189 199parallel
Strand 4
A
261 269anti-parallel
Strand 5
A
324 333anti-parallel
Strand 6
A
317 321anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
84 87anti-parallel
Strand 3
B
90 95anti-parallel
Strand 4
B
47 53parallel
Strand 5
B
23 28parallel
Strand 6
B
112 115parallel
Strand 7
B
136 139parallel
Strand 8
B
165 167parallel
Strand 9
B
148 149parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 229first strand
Strand 2
B
248 255anti-parallel
Strand 3
B
189 199parallel
Strand 4
B
261 269anti-parallel
Strand 5
B
324 333anti-parallel
Strand 6
B
309 312anti-parallel
Strand 7
B
290 293parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 229first strand
Strand 2
B
248 255anti-parallel
Strand 3
B
189 199parallel
Strand 4
B
261 269anti-parallel
Strand 5
B
324 333anti-parallel
Strand 6
B
317 321anti-parallel
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