Analysis of interatomic Contacts of Structural Units in PDB entry:
5M7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M7J entry

There are 4 chains in PDB entry 5M7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 1LYS 332
B
 ALA 1SER 273
C
 ALA 1LYS 323
D
 TYR 2LEU 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 5M7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 36Right-handed alpha
Helix 2
AA2
A
51 56Right-handed alpha
Helix 3
AA3
A
66 81Right-handed alpha
Helix 4
AA4
A
85 90Right-handed 310
Helix 5
AA5
A
101 121Right-handed alpha
Helix 6
AA6
A
121 126Right-handed alpha
Helix 7
AA7
A
132 137Right-handed alpha
Helix 8
AA8
A
168 170Right-handed 310
Helix 9
AA9
A
171 179Right-handed alpha
Helix 10
AB1
A
188 194Right-handed alpha
Helix 11
AB2
A
216 220Right-handed 310
Helix 12
AB3
A
223 241Right-handed alpha
Helix 13
AB4
A
243 247Right-handed 310
Helix 14
AB5
A
256 260Right-handed 310
Helix 15
AB6
A
261 281Right-handed alpha
Helix 16
AB7
A
282 288Right-handed 310
Helix 17
AB8
A
290 294Right-handed 310
Helix 18
AB9
A
314 319Right-handed 310
Helix 19
AC1
A
325 329Right-handed 310
Helix 20
AC2
B
6 10Right-handed 310
Helix 21
AC3
B
31 55Right-handed alpha
Helix 22
AC4
B
70 74Right-handed 310
Helix 23
AC5
B
79 82Right-handed 310
Helix 24
AC6
B
83 112Right-handed alpha
Helix 25
AC7
B
115 133Right-handed alpha
Helix 26
AC8
B
133 140Right-handed alpha
Helix 27
AC9
B
141 145Right-handed 310
Helix 28
AD1
B
151 163Right-handed alpha
Helix 29
AD2
B
164 165Right-handed 310
Helix 30
AD3
B
166 169Right-handed 310
Helix 31
AD4
B
170 199Right-handed alpha
Helix 32
AD5
B
208 220Right-handed alpha
Helix 33
AD6
B
227 251Right-handed alpha
Helix 34
AD7
B
258 263Right-handed alpha
Helix 35
AD8
B
263 268Right-handed alpha
Helix 36
AD9
B
269 273Right-handed 310
Helix 37
AE1
C
2 6Right-handed 310
Helix 38
AE2
C
24 26Right-handed 310
Helix 39
AE3
C
37 41Right-handed 310
Helix 40
AE4
C
52 77Right-handed alpha
Helix 41
AE5
C
80 88Right-handed alpha
Helix 42
AE6
C
89 91Right-handed 310
Helix 43
AE7
C
106 109Right-handed 310
Helix 44
AE8
C
110 138Right-handed alpha
Helix 45
AE9
C
142 160Right-handed alpha
Helix 46
AF1
C
160 167Right-handed alpha
Helix 47
AF2
C
168 172Right-handed 310
Helix 48
AF3
C
176 191Right-handed alpha
Helix 49
AF4
C
193 196Right-handed 310
Helix 50
AF5
C
197 224Right-handed alpha
Helix 51
AF6
C
225 228Right-handed 310
Helix 52
AF7
C
231 238Right-handed alpha
Helix 53
AF8
C
240 255Right-handed alpha
Helix 54
AF9
C
261 285Right-handed alpha
Helix 55
AG1
C
291 299Right-handed alpha
Helix 56
AG2
C
314 318Right-handed 310
Helix 57
AG3
D
11 31Right-handed alpha
Helix 58
AG4
D
31 36Right-handed alpha
Helix 59
AG5
D
106 111Right-handed alpha
Helix 60
AG6
D
112 116Right-handed 310
Helix 61
AG7
D
199 201Right-handed 310
Helix 62
AG8
D
215 221Right-handed 310
Helix 63
AG9
D
231 249Right-handed alpha
Helix 64
AH1
D
250 255Right-handed 310
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There are 9 sheets in PDB entry 5M7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
22 23anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
29 30anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
D
144 145anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 29first strand
Strand 2
C
49 50anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 34first strand
Strand 2
C
45 46anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 69first strand
Strand 2
D
75 78anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
90 92first strand
Strand 2
D
101 103anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
134 136first strand
Strand 2
D
164 174anti-parallel
Strand 3
D
179 187anti-parallel
Strand 4
D
192 197anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
134 136first strand
Strand 2
D
164 174anti-parallel
Strand 3
D
156 158anti-parallel
Strand 4
D
208 209parallel
Strand 5
D
202 203anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il