Analysis of interatomic Contacts of Structural Units in PDB entry:
5M7L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M7L entry

There are 4 chains in PDB entry 5M7L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 1LYS 332
B
 ALA 1SER 273
C
 ALA 1LYS 323
D
 TYR 2LEU 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 5M7L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 36Right-handed alpha
Helix 2
AA2
A
51 56Right-handed alpha
Helix 3
AA3
A
66 81Right-handed alpha
Helix 4
AA4
A
86 90Right-handed 310
Helix 5
AA5
A
101 121Right-handed alpha
Helix 6
AA6
A
132 137Right-handed alpha
Helix 7
AA7
A
168 170Right-handed 310
Helix 8
AA8
A
171 179Right-handed alpha
Helix 9
AA9
A
188 194Right-handed alpha
Helix 10
AB1
A
216 220Right-handed 310
Helix 11
AB2
A
223 241Right-handed alpha
Helix 12
AB3
A
243 247Right-handed 310
Helix 13
AB4
A
256 260Right-handed 310
Helix 14
AB5
A
261 281Right-handed alpha
Helix 15
AB6
A
282 288Right-handed 310
Helix 16
AB7
A
290 294Right-handed 310
Helix 17
AB8
A
305 310Right-handed alpha
Helix 18
AB9
A
314 319Right-handed 310
Helix 19
AC1
A
325 329Right-handed 310
Helix 20
AC2
B
31 56Right-handed alpha
Helix 21
AC3
B
60 63Right-handed 310
Helix 22
AC4
B
70 74Right-handed 310
Helix 23
AC5
B
79 82Right-handed 310
Helix 24
AC6
B
83 112Right-handed alpha
Helix 25
AC7
B
115 121Right-handed alpha
Helix 26
AC8
B
121 133Right-handed alpha
Helix 27
AC9
B
133 140Right-handed alpha
Helix 28
AD1
B
141 145Right-handed 310
Helix 29
AD2
B
151 163Right-handed alpha
Helix 30
AD3
B
164 165Right-handed 310
Helix 31
AD4
B
166 169Right-handed 310
Helix 32
AD5
B
170 199Right-handed alpha
Helix 33
AD6
B
208 220Right-handed alpha
Helix 34
AD7
B
227 251Right-handed alpha
Helix 35
AD8
B
258 263Right-handed alpha
Helix 36
AD9
B
263 268Right-handed alpha
Helix 37
AE1
C
37 41Right-handed 310
Helix 38
AE2
C
51 76Right-handed alpha
Helix 39
AE3
C
80 88Right-handed alpha
Helix 40
AE4
C
110 138Right-handed alpha
Helix 41
AE5
C
142 160Right-handed alpha
Helix 42
AE6
C
160 167Right-handed alpha
Helix 43
AE7
C
168 172Right-handed 310
Helix 44
AE8
C
178 191Right-handed alpha
Helix 45
AE9
C
193 196Right-handed 310
Helix 46
AF1
C
197 224Right-handed alpha
Helix 47
AF2
C
225 228Right-handed 310
Helix 48
AF3
C
232 237Right-handed alpha
Helix 49
AF4
C
240 254Right-handed alpha
Helix 50
AF5
C
261 288Right-handed alpha
Helix 51
AF6
C
291 299Right-handed alpha
Helix 52
AF7
C
314 318Right-handed 310
Helix 53
AF8
D
11 30Right-handed alpha
Helix 54
AF9
D
31 36Right-handed alpha
Helix 55
AG1
D
112 116Right-handed 310
Helix 56
AG2
D
199 201Right-handed 310
Helix 57
AG3
D
214 221Right-handed 310
Helix 58
AG4
D
231 249Right-handed alpha
Helix 59
AG5
D
250 254Right-handed 310
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There are 11 sheets in PDB entry 5M7L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
22 23anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
29 30anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 66first strand
Strand 2
B
148 149anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
D
144 145anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 29first strand
Strand 2
C
49 50anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 34first strand
Strand 2
C
45 46anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 93first strand
Strand 2
C
175 176anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 69first strand
Strand 2
D
75 78anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
90 92first strand
Strand 2
D
101 103anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
134 136first strand
Strand 2
D
164 174anti-parallel
Strand 3
D
179 187anti-parallel
Strand 4
D
194 197anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
134 136first strand
Strand 2
D
164 174anti-parallel
Strand 3
D
156 158anti-parallel
Strand 4
D
208 209parallel
Strand 5
D
202 203anti-parallel
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