Analysis of interatomic Contacts of Structural Units in PDB entry:
5M7N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M7N entry

There are 2 chains in PDB entry 5M7N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 453
B
 MET 1VAL 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 5M7N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 25Right-handed alpha
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
62 74Right-handed alpha
Helix 4
AA4
A
88 97Right-handed alpha
Helix 5
AA5
A
108 133Right-handed alpha
Helix 6
AA6
A
146 160Right-handed alpha
Helix 7
AA7
A
175 187Right-handed alpha
Helix 8
AA8
A
203 205Right-handed 310
Helix 9
AA9
A
206 213Right-handed alpha
Helix 10
AB1
A
224 229Right-handed alpha
Helix 11
AB2
A
239 242Right-handed 310
Helix 12
AB3
A
243 257Right-handed alpha
Helix 13
AB4
A
281 288Right-handed alpha
Helix 14
AB5
A
292 300Right-handed alpha
Helix 15
AB6
A
308 314Right-handed 310
Helix 16
AB7
A
315 332Right-handed alpha
Helix 17
AB8
A
339 349Right-handed alpha
Helix 18
AB9
A
353 369Right-handed alpha
Helix 19
AC1
A
379 383Right-handed 310
Helix 20
AC2
A
384 389Right-handed alpha
Helix 21
AC3
A
399 404Right-handed alpha
Helix 22
AC4
A
406 426Right-handed alpha
Helix 23
AC5
A
429 438Right-handed alpha
Helix 24
AC6
A
440 452Right-handed alpha
Helix 25
AC7
B
11 24Right-handed alpha
Helix 26
AC8
B
34 45Right-handed alpha
Helix 27
AC9
B
64 74Right-handed alpha
Helix 28
AD1
B
87 97Right-handed alpha
Helix 29
AD2
B
108 136Right-handed alpha
Helix 30
AD3
B
146 160Right-handed alpha
Helix 31
AD4
B
175 186Right-handed alpha
Helix 32
AD5
B
200 202Right-handed 310
Helix 33
AD6
B
203 205Right-handed 310
Helix 34
AD7
B
206 213Right-handed alpha
Helix 35
AD8
B
224 229Right-handed alpha
Helix 36
AD9
B
239 242Right-handed 310
Helix 37
AE1
B
243 257Right-handed alpha
Helix 38
AE2
B
281 288Right-handed alpha
Helix 39
AE3
B
292 300Right-handed alpha
Helix 40
AE4
B
308 314Right-handed 310
Helix 41
AE5
B
315 332Right-handed alpha
Helix 42
AE6
B
339 349Right-handed alpha
Helix 43
AE7
B
353 370Right-handed alpha
Helix 44
AE8
B
379 383Right-handed 310
Helix 45
AE9
B
401 405Right-handed 310
Helix 46
AF1
B
406 426Right-handed alpha
Helix 47
AF2
B
429 438Right-handed alpha
Helix 48
AF3
B
440 452Right-handed alpha
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There are 6 sheets in PDB entry 5M7N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 32first strand
Strand 2
A
4 8parallel
Strand 3
A
49 53parallel
Strand 4
A
79 84parallel
Strand 5
A
101 105parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 198first strand
Strand 2
A
233 237parallel
Strand 3
A
273 278parallel
Strand 4
A
166 169parallel
Strand 5
A
302 305parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
267 269anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 32first strand
Strand 2
B
4 8parallel
Strand 3
B
49 53parallel
Strand 4
B
79 83parallel
Strand 5
B
101 104parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 198first strand
Strand 2
B
233 237parallel
Strand 3
B
273 278parallel
Strand 4
B
166 169parallel
Strand 5
B
302 305parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 260first strand
Strand 2
B
267 269anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il