Analysis of interatomic Contacts of Structural Units in PDB entry:
5M7W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M7W entry

There are 4 chains in PDB entry 5M7W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 32VAL 217
B
 GLU 32VAL 217
C
 GLU 32HIS 200
D
 GLU 32SER 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5M7W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 58Right-handed 310
Helix 2
AA2
A
69 79Right-handed alpha
Helix 3
AA3
A
81 85Right-handed 310
Helix 4
AA4
A
120 125Right-handed alpha
Helix 5
AA5
A
125 139Right-handed alpha
Helix 6
AA6
A
142 147Right-handed 310
Helix 7
AA7
A
172 188Right-handed alpha
Helix 8
AA8
A
200 204Right-handed alpha
Helix 9
AA9
B
55 59Right-handed alpha
Helix 10
AB1
B
69 79Right-handed alpha
Helix 11
AB2
B
81 85Right-handed 310
Helix 12
AB3
B
120 125Right-handed alpha
Helix 13
AB4
B
125 139Right-handed alpha
Helix 14
AB5
B
142 147Right-handed 310
Helix 15
AB6
B
172 188Right-handed alpha
Helix 16
AB7
B
200 204Right-handed alpha
Helix 17
AB8
C
56 58Right-handed 310
Helix 18
AB9
C
69 79Right-handed alpha
Helix 19
AC1
C
81 85Right-handed 310
Helix 20
AC2
C
118 125Right-handed alpha
Helix 21
AC3
C
125 139Right-handed alpha
Helix 22
AC4
C
142 147Right-handed 310
Helix 23
AC5
C
172 188Right-handed alpha
Helix 24
AC6
D
56 58Right-handed 310
Helix 25
AC7
D
69 79Right-handed alpha
Helix 26
AC8
D
81 85Right-handed 310
Helix 27
AC9
D
118 125Right-handed alpha
Helix 28
AD1
D
125 139Right-handed alpha
Helix 29
AD2
D
142 147Right-handed 310
Helix 30
AD3
D
172 188Right-handed alpha
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There are 4 sheets in PDB entry 5M7W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 68first strand
Strand 2
A
38 49anti-parallel
Strand 3
A
89 95anti-parallel
Strand 4
A
149 155anti-parallel
Strand 5
A
162 167anti-parallel
Strand 6
A
111 116anti-parallel
Strand 7
A
195 199anti-parallel
Strand 8
A
215 217anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 68first strand
Strand 2
B
38 49anti-parallel
Strand 3
B
89 95anti-parallel
Strand 4
B
149 156anti-parallel
Strand 5
B
162 167anti-parallel
Strand 6
B
111 116anti-parallel
Strand 7
B
195 199anti-parallel
Strand 8
B
215 217anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 68first strand
Strand 2
C
38 48anti-parallel
Strand 3
C
90 95anti-parallel
Strand 4
C
149 155anti-parallel
Strand 5
C
161 167anti-parallel
Strand 6
C
112 117anti-parallel
Strand 7
C
196 198anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 68first strand
Strand 2
D
38 49anti-parallel
Strand 3
D
89 95anti-parallel
Strand 4
D
149 156anti-parallel
Strand 5
D
162 167anti-parallel
Strand 6
D
111 116anti-parallel
Strand 7
D
196 198anti-parallel
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