Analysis of interatomic Contacts of Structural Units in PDB entry:
5M87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M87 entry

There is 1 chain in PDB entry 5M87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 13THR 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 5M87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 38Right-handed alpha
Helix 2
AA2
A
39 47Right-handed alpha
Helix 3
AA3
A
48 53Right-handed 310
Helix 4
AA4
A
54 65Right-handed alpha
Helix 5
AA5
A
69 95Right-handed alpha
Helix 6
AA6
A
97 106Right-handed alpha
Helix 7
AA7
A
107 141Right-handed alpha
Helix 8
AA8
A
144 153Right-handed alpha
Helix 9
AA9
A
154 164Right-handed alpha
Helix 10
AB1
A
166 191Right-handed alpha
Helix 11
AB2
A
195 203Right-handed alpha
Helix 12
AB3
A
220 231Right-handed alpha
Helix 13
AB4
A
234 245Right-handed alpha
Helix 14
AB5
A
246 248Right-handed 310
Helix 15
AB6
A
254 289Right-handed alpha
Helix 16
AB7
A
300 309Right-handed alpha
Helix 17
AB8
A
310 314Right-handed 310
Helix 18
AB9
A
316 326Right-handed alpha
Helix 19
AC1
A
327 341Right-handed alpha
Helix 20
AC2
A
341 359Right-handed alpha
Helix 21
AC3
A
364 390Right-handed alpha
Helix 22
AC4
A
394 407Right-handed alpha
Helix 23
AC5
A
407 414Right-handed alpha
Helix 24
AC6
A
414 427Right-handed alpha
Helix 25
AC7
A
427 436Right-handed alpha
Helix 26
AC8
A
438 467Right-handed alpha
Helix 27
AC9
A
473 506Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5M87
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il