Analysis of interatomic Contacts of Structural Units in PDB entry:
5M89

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M89 entry

There are 2 chains in PDB entry 5M89 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 154	GLU 479
B	VAL 151	GLU 479

There are 8 helices in PDB entry 5M89. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	157	178	Right-handed alpha
Helix 2	AA2	A	186	192	Right-handed alpha
Helix 3	AA3	A	395	398	Right-handed 310
Helix 4	AA4	A	458	461	Right-handed 310
Helix 5	AA5	B	157	176	Right-handed alpha
Helix 6	AA6	B	186	192	Right-handed alpha
Helix 7	AA7	B	395	398	Right-handed 310
Helix 8	AA8	B	458	461	Right-handed 310

There are 14 sheets in PDB entry 5M89. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	200	first strand
Strand 2	A	471	476	anti-parallel
Strand 3	A	463	466	anti-parallel
Strand 4	A	453	456	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	212	first strand
Strand 2	A	215	220	anti-parallel
Strand 3	A	224	229	anti-parallel
Strand 4	A	234	240	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	251	first strand
Strand 2	A	254	259	anti-parallel
Strand 3	A	263	268	anti-parallel
Strand 4	A	271	277	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	288	first strand
Strand 2	A	294	299	anti-parallel
Strand 3	A	303	308	anti-parallel
Strand 4	A	313	319	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	329	first strand
Strand 2	A	335	340	anti-parallel
Strand 3	A	344	349	anti-parallel
Strand 4	A	355	360	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	370	first strand
Strand 2	A	376	381	anti-parallel
Strand 3	A	386	391	anti-parallel
Strand 4	A	400	405	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	414	first strand
Strand 2	A	420	425	anti-parallel
Strand 3	A	428	435	anti-parallel
Strand 4	A	440	447	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	200	first strand
Strand 2	B	471	476	anti-parallel
Strand 3	B	463	466	anti-parallel
Strand 4	B	453	456	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	212	first strand
Strand 2	B	215	220	anti-parallel
Strand 3	B	224	229	anti-parallel
Strand 4	B	234	240	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	251	first strand
Strand 2	B	254	259	anti-parallel
Strand 3	B	263	268	anti-parallel
Strand 4	B	271	277	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	288	first strand
Strand 2	B	294	299	anti-parallel
Strand 3	B	303	308	anti-parallel
Strand 4	B	313	319	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	329	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	344	349	anti-parallel
Strand 4	B	355	360	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	370	first strand
Strand 2	B	376	381	anti-parallel
Strand 3	B	386	391	anti-parallel
Strand 4	B	400	405	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	414	first strand
Strand 2	B	420	424	anti-parallel
Strand 3	B	429	435	anti-parallel
Strand 4	B	440	447	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M89

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M89