Analysis of interatomic Contacts of Structural Units in PDB entry:
5M8B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M8B entry

There are 2 chains in PDB entry 5M8B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	LYS 326
B	VAL 2	LYS 326

There are 14 helices in PDB entry 5M8B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	7	Right-handed 310
Helix 2	AA2	A	48	54	Right-handed 310
Helix 3	AA3	A	121	123	Right-handed 310
Helix 4	AA4	A	191	195	Right-handed 310
Helix 5	AA5	A	241	245	Right-handed 310
Helix 6	AA6	A	256	260	Right-handed 310
Helix 7	AA7	A	293	297	Right-handed 310
Helix 8	AA8	B	3	7	Right-handed 310
Helix 9	AA9	B	48	54	Right-handed 310
Helix 10	AB1	B	121	123	Right-handed 310
Helix 11	AB2	B	191	195	Right-handed 310
Helix 12	AB3	B	241	245	Right-handed 310
Helix 13	AB4	B	256	260	Right-handed 310
Helix 14	AB5	B	293	297	Right-handed 310

There are 14 sheets in PDB entry 5M8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	22	first strand
Strand 2	A	28	33	anti-parallel
Strand 3	A	39	45	anti-parallel
Strand 4	A	57	61	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	82	first strand
Strand 2	A	85	93	anti-parallel
Strand 3	A	107	113	anti-parallel
Strand 4	A	125	130	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	147	first strand
Strand 2	A	150	157	anti-parallel
Strand 3	A	167	175	anti-parallel
Strand 4	A	178	179	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	147	first strand
Strand 2	A	150	157	anti-parallel
Strand 3	A	167	175	anti-parallel
Strand 4	A	184	187	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	209	first strand
Strand 2	A	212	219	anti-parallel
Strand 3	A	227	234	anti-parallel
Strand 4	A	246	247	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	271	first strand
Strand 2	A	278	285	anti-parallel
Strand 3	A	301	306	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	315	316	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	22	first strand
Strand 2	B	28	33	anti-parallel
Strand 3	B	39	45	anti-parallel
Strand 4	B	57	61	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	82	first strand
Strand 2	B	85	93	anti-parallel
Strand 3	B	107	113	anti-parallel
Strand 4	B	125	130	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	147	first strand
Strand 2	B	150	157	anti-parallel
Strand 3	B	167	175	anti-parallel
Strand 4	B	178	179	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	147	first strand
Strand 2	B	150	157	anti-parallel
Strand 3	B	167	175	anti-parallel
Strand 4	B	184	187	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	209	first strand
Strand 2	B	212	219	anti-parallel
Strand 3	B	227	234	anti-parallel
Strand 4	B	246	247	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	271	first strand
Strand 2	B	278	285	anti-parallel
Strand 3	B	301	306	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	315	316	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M8B

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M8B