Analysis of interatomic Contacts of Structural Units in PDB entry:
5M8C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M8C entry

There are 2 chains in PDB entry 5M8C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 144	PRO 503
B	ALA 144	PRO 503

There are 3 helices in PDB entry 5M8C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	148	165	Right-handed alpha
Helix 2	AA2	A	240	244	Right-handed 310
Helix 3	AA3	B	148	165	Right-handed alpha

There are 15 sheets in PDB entry 5M8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	187	first strand
Strand 2	A	495	502	anti-parallel
Strand 3	A	485	491	anti-parallel
Strand 4	A	476	482	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	194	first strand
Strand 2	A	248	252	parallel
Strand 3	A	256	261	anti-parallel
Strand 4	A	265	270	anti-parallel
Strand 5	A	276	281	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	200	first strand
Strand 2	A	206	216	anti-parallel
Strand 3	A	219	225	anti-parallel
Strand 4	A	232	237	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	292	first strand
Strand 2	A	301	306	anti-parallel
Strand 3	A	311	315	anti-parallel
Strand 4	A	321	325	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	338	first strand
Strand 2	A	344	348	anti-parallel
Strand 3	A	354	358	anti-parallel
Strand 4	A	367	368	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	382	first strand
Strand 2	A	388	393	anti-parallel
Strand 3	A	396	401	anti-parallel
Strand 4	A	414	415	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	428	first strand
Strand 2	A	434	439	anti-parallel
Strand 3	A	444	451	anti-parallel
Strand 4	A	456	459	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	428	first strand
Strand 2	A	434	439	anti-parallel
Strand 3	A	444	451	anti-parallel
Strand 4	A	465	466	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	187	first strand
Strand 2	B	495	502	anti-parallel
Strand 3	B	487	491	anti-parallel
Strand 4	B	476	480	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	B	248	252	parallel
Strand 3	B	256	261	anti-parallel
Strand 4	B	265	270	anti-parallel
Strand 5	B	276	281	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	200	first strand
Strand 2	B	206	214	anti-parallel
Strand 3	B	219	225	anti-parallel
Strand 4	B	232	237	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	292	first strand
Strand 2	B	301	306	anti-parallel
Strand 3	B	311	315	anti-parallel
Strand 4	B	321	325	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	338	first strand
Strand 2	B	344	348	anti-parallel
Strand 3	B	354	358	anti-parallel
Strand 4	B	367	368	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	382	first strand
Strand 2	B	388	393	anti-parallel
Strand 3	B	396	401	anti-parallel
Strand 4	B	414	415	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	428	first strand
Strand 2	B	434	438	anti-parallel
Strand 3	B	445	450	anti-parallel
Strand 4	B	457	459	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M8C

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M8C