Analysis of interatomic Contacts of Structural Units in PDB entry:
5M8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M8E entry

There are 2 chains in PDB entry 5M8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ASN 324
B
 THR 2ASN 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5M8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 52Right-handed 310
Helix 2
AA2
A
119 121Right-handed 310
Helix 3
AA3
A
189 193Right-handed 310
Helix 4
AA4
A
239 243Right-handed 310
Helix 5
AA5
A
291 295Right-handed 310
Helix 6
AA6
B
46 52Right-handed 310
Helix 7
AA7
B
119 121Right-handed 310
Helix 8
AA8
B
189 193Right-handed 310
Helix 9
AA9
B
239 243Right-handed 310
Helix 10
AB1
B
291 295Right-handed 310
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There are 14 sheets in PDB entry 5M8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 20first strand
Strand 2
A
26 31anti-parallel
Strand 3
A
37 43anti-parallel
Strand 4
A
55 59anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 80first strand
Strand 2
A
83 91anti-parallel
Strand 3
A
105 111anti-parallel
Strand 4
A
123 128anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 145first strand
Strand 2
A
148 155anti-parallel
Strand 3
A
165 173anti-parallel
Strand 4
A
176 177anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 145first strand
Strand 2
A
148 155anti-parallel
Strand 3
A
165 173anti-parallel
Strand 4
A
182 185anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 207first strand
Strand 2
A
210 217anti-parallel
Strand 3
A
225 232anti-parallel
Strand 4
A
244 245anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 269first strand
Strand 2
A
276 283anti-parallel
Strand 3
A
299 304anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 307first strand
Strand 2
A
313 314anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 20first strand
Strand 2
B
26 31anti-parallel
Strand 3
B
37 43anti-parallel
Strand 4
B
55 59anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 80first strand
Strand 2
B
83 91anti-parallel
Strand 3
B
105 111anti-parallel
Strand 4
B
123 128anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 145first strand
Strand 2
B
148 155anti-parallel
Strand 3
B
165 173anti-parallel
Strand 4
B
176 177anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 145first strand
Strand 2
B
148 155anti-parallel
Strand 3
B
165 173anti-parallel
Strand 4
B
182 185anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 207first strand
Strand 2
B
210 217anti-parallel
Strand 3
B
225 232anti-parallel
Strand 4
B
244 245anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 269first strand
Strand 2
B
276 283anti-parallel
Strand 3
B
299 304anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 307first strand
Strand 2
B
313 314anti-parallel
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