Analysis of interatomic Contacts of Structural Units in PDB entry:
5M8H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M8H entry

There are 8 chains in PDB entry 5M8H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	VAL 387
B	GLY 0	VAL 387
C	MET 1	VAL 387
D	GLY 0	VAL 387
E	PHE 21	ASN 228
F	GLU 20	ASN 228
G	PHE 21	ILE 227
H	GLU 20	ASN 228

There are 96 helices in PDB entry 5M8H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	31	Right-handed alpha
Helix 2	AA2	A	44	48	Right-handed alpha
Helix 3	AA3	A	52	59	Right-handed alpha
Helix 4	AA4	A	77	89	Right-handed alpha
Helix 5	AA5	A	128	146	Right-handed alpha
Helix 6	AA6	A	159	169	Right-handed alpha
Helix 7	AA7	A	172	185	Right-handed alpha
Helix 8	AA8	A	187	197	Right-handed alpha
Helix 9	AA9	A	200	211	Right-handed alpha
Helix 10	AB1	A	216	221	Right-handed alpha
Helix 11	AB2	A	222	227	Right-handed alpha
Helix 12	AB3	A	228	250	Right-handed alpha
Helix 13	AB4	A	312	318	Right-handed 310
Helix 14	AB5	A	329	335	Right-handed alpha
Helix 15	AB6	A	337	354	Right-handed alpha
Helix 16	AB7	B	11	31	Right-handed alpha
Helix 17	AB8	B	44	48	Right-handed alpha
Helix 18	AB9	B	52	59	Right-handed alpha
Helix 19	AC1	B	77	89	Right-handed alpha
Helix 20	AC2	B	128	146	Right-handed alpha
Helix 21	AC3	B	159	169	Right-handed alpha
Helix 22	AC4	B	172	185	Right-handed alpha
Helix 23	AC5	B	187	197	Right-handed alpha
Helix 24	AC6	B	200	211	Right-handed alpha
Helix 25	AC7	B	216	221	Right-handed alpha
Helix 26	AC8	B	222	227	Right-handed alpha
Helix 27	AC9	B	228	250	Right-handed alpha
Helix 28	AD1	B	312	318	Right-handed 310
Helix 29	AD2	B	329	335	Right-handed alpha
Helix 30	AD3	B	337	354	Right-handed alpha
Helix 31	AD4	C	11	31	Right-handed alpha
Helix 32	AD5	C	44	48	Right-handed alpha
Helix 33	AD6	C	52	59	Right-handed alpha
Helix 34	AD7	C	77	89	Right-handed alpha
Helix 35	AD8	C	128	146	Right-handed alpha
Helix 36	AD9	C	159	169	Right-handed alpha
Helix 37	AE1	C	172	185	Right-handed alpha
Helix 38	AE2	C	187	197	Right-handed alpha
Helix 39	AE3	C	200	211	Right-handed alpha
Helix 40	AE4	C	216	221	Right-handed alpha
Helix 41	AE5	C	222	227	Right-handed alpha
Helix 42	AE6	C	228	250	Right-handed alpha
Helix 43	AE7	C	312	318	Right-handed 310
Helix 44	AE8	C	329	335	Right-handed alpha
Helix 45	AE9	C	337	354	Right-handed alpha
Helix 46	AF1	D	11	31	Right-handed alpha
Helix 47	AF2	D	44	48	Right-handed alpha
Helix 48	AF3	D	52	59	Right-handed alpha
Helix 49	AF4	D	77	89	Right-handed alpha
Helix 50	AF5	D	128	146	Right-handed alpha
Helix 51	AF6	D	159	169	Right-handed alpha
Helix 52	AF7	D	172	185	Right-handed alpha
Helix 53	AF8	D	187	197	Right-handed alpha
Helix 54	AF9	D	200	211	Right-handed alpha
Helix 55	AG1	D	216	221	Right-handed alpha
Helix 56	AG2	D	222	227	Right-handed alpha
Helix 57	AG3	D	228	250	Right-handed alpha
Helix 58	AG4	D	312	318	Right-handed 310
Helix 59	AG5	D	329	335	Right-handed alpha
Helix 60	AG6	D	337	354	Right-handed alpha
Helix 61	AG7	E	31	44	Right-handed alpha
Helix 62	AG8	E	73	75	Right-handed 310
Helix 63	AG9	E	76	83	Right-handed alpha
Helix 64	AH1	E	93	100	Right-handed alpha
Helix 65	AH2	E	138	149	Right-handed alpha
Helix 66	AH3	E	163	168	Right-handed alpha
Helix 67	AH4	E	181	187	Right-handed alpha
Helix 68	AH5	E	206	212	Right-handed alpha
Helix 69	AH6	E	212	228	Right-handed alpha
Helix 70	AH7	F	31	44	Right-handed alpha
Helix 71	AH8	F	73	75	Right-handed 310
Helix 72	AH9	F	76	83	Right-handed alpha
Helix 73	AI1	F	93	100	Right-handed alpha
Helix 74	AI2	F	138	149	Right-handed alpha
Helix 75	AI3	F	163	168	Right-handed alpha
Helix 76	AI4	F	181	187	Right-handed alpha
Helix 77	AI5	F	206	212	Right-handed alpha
Helix 78	AI6	F	212	228	Right-handed alpha
Helix 79	AI7	G	31	44	Right-handed alpha
Helix 80	AI8	G	73	75	Right-handed 310
Helix 81	AI9	G	76	83	Right-handed alpha
Helix 82	AJ1	G	93	100	Right-handed alpha
Helix 83	AJ2	G	138	149	Right-handed alpha
Helix 84	AJ3	G	163	168	Right-handed alpha
Helix 85	AJ4	G	181	187	Right-handed alpha
Helix 86	AJ5	G	206	212	Right-handed alpha
Helix 87	AJ6	G	212	227	Right-handed alpha
Helix 88	AJ7	H	31	44	Right-handed alpha
Helix 89	AJ8	H	73	75	Right-handed 310
Helix 90	AJ9	H	76	83	Right-handed alpha
Helix 91	AK1	H	93	100	Right-handed alpha
Helix 92	AK2	H	138	149	Right-handed alpha
Helix 93	AK3	H	163	168	Right-handed alpha
Helix 94	AK4	H	181	187	Right-handed alpha
Helix 95	AK5	H	206	212	Right-handed alpha
Helix 96	AK6	H	212	228	Right-handed alpha

There are 20 sheets in PDB entry 5M8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	C	34	37	anti-parallel
Strand 3	C	94	101	parallel
Strand 4	C	117	124	anti-parallel
Strand 5	C	303	310	anti-parallel
Strand 6	C	283	289	anti-parallel
Strand 7	C	269	275	anti-parallel
Strand 8	C	152	158	anti-parallel
Strand 9	C	253	255	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	255	first strand
Strand 2	A	152	158	parallel
Strand 3	A	269	275	anti-parallel
Strand 4	A	283	288	anti-parallel
Strand 5	A	304	310	anti-parallel
Strand 6	A	117	124	anti-parallel
Strand 7	A	94	101	anti-parallel
Strand 8	A	34	37	parallel
Strand 9	C	9	10	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	70	73	anti-parallel
Strand 3	A	61	63	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	359	first strand
Strand 2	A	325	328	parallel
Strand 3	A	373	378	parallel
Strand 4	A	381	386	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	10	first strand
Strand 2	D	34	37	anti-parallel
Strand 3	D	94	101	parallel
Strand 4	D	117	124	anti-parallel
Strand 5	D	303	310	anti-parallel
Strand 6	D	283	289	anti-parallel
Strand 7	D	269	275	anti-parallel
Strand 8	D	152	158	anti-parallel
Strand 9	D	253	255	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	255	first strand
Strand 2	B	152	158	parallel
Strand 3	B	269	275	anti-parallel
Strand 4	B	283	289	anti-parallel
Strand 5	B	303	310	anti-parallel
Strand 6	B	117	124	anti-parallel
Strand 7	B	94	101	anti-parallel
Strand 8	B	34	37	parallel
Strand 9	D	9	10	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	70	73	anti-parallel
Strand 3	B	61	63	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	359	first strand
Strand 2	B	325	328	parallel
Strand 3	B	373	378	parallel
Strand 4	B	381	386	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	70	73	anti-parallel
Strand 3	C	61	63	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	359	first strand
Strand 2	C	325	328	parallel
Strand 3	C	373	378	parallel
Strand 4	C	381	386	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	43	first strand
Strand 2	D	70	73	anti-parallel
Strand 3	D	61	63	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	357	359	first strand
Strand 2	D	325	328	parallel
Strand 3	D	373	378	parallel
Strand 4	D	381	386	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	61	first strand
Strand 2	E	67	72	anti-parallel
Strand 3	E	24	29	parallel
Strand 4	E	88	92	parallel
Strand 5	E	200	205	anti-parallel
Strand 6	E	104	109	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	157	first strand
Strand 2	E	132	136	parallel
Strand 3	E	173	178	parallel
Strand 4	E	115	122	anti-parallel
Strand 5	E	189	198	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	61	first strand
Strand 2	F	67	72	anti-parallel
Strand 3	F	24	29	parallel
Strand 4	F	88	92	parallel
Strand 5	F	200	205	anti-parallel
Strand 6	F	104	109	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	157	first strand
Strand 2	F	132	136	parallel
Strand 3	F	173	178	parallel
Strand 4	F	115	122	anti-parallel
Strand 5	F	189	198	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	61	first strand
Strand 2	G	67	72	anti-parallel
Strand 3	G	24	29	parallel
Strand 4	G	88	92	parallel
Strand 5	G	200	205	anti-parallel
Strand 6	G	104	109	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	153	157	first strand
Strand 2	G	132	136	parallel
Strand 3	G	173	178	parallel
Strand 4	G	115	122	anti-parallel
Strand 5	G	189	198	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	61	first strand
Strand 2	H	67	72	anti-parallel
Strand 3	H	24	29	parallel
Strand 4	H	88	92	parallel
Strand 5	H	200	205	anti-parallel
Strand 6	H	104	109	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	157	first strand
Strand 2	H	132	136	parallel
Strand 3	H	173	178	parallel
Strand 4	H	115	122	anti-parallel
Strand 5	H	189	198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M8H

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M8H