Analysis of interatomic Contacts of Structural Units in PDB entry:
5M8O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M8O entry

There are 4 chains in PDB entry 5M8O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 25	SER 470
B	GLN 25	SER 470
C	GLN 25	SER 470
D	GLN 25	SER 470

There are 78 helices in PDB entry 5M8O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	31	Right-handed 310
Helix 2	AA2	A	32	39	Right-handed alpha
Helix 3	AA3	A	54	58	Right-handed 310
Helix 4	AA4	A	132	136	Right-handed 310
Helix 5	AA5	A	137	154	Right-handed alpha
Helix 6	AA6	A	165	169	Right-handed 310
Helix 7	AA7	A	183	197	Right-handed alpha
Helix 8	AA8	A	218	240	Right-handed alpha
Helix 9	AA9	A	281	286	Right-handed 310
Helix 10	AB1	A	292	300	Right-handed alpha
Helix 11	AB2	A	321	326	Right-handed 310
Helix 12	AB3	A	329	337	Right-handed alpha
Helix 13	AB4	A	354	361	Right-handed alpha
Helix 14	AB5	A	375	383	Right-handed alpha
Helix 15	AB6	A	384	385	Right-handed 310
Helix 16	AB7	A	386	390	Right-handed 310
Helix 17	AB8	A	393	397	Right-handed 310
Helix 18	AB9	A	398	418	Right-handed alpha
Helix 19	AC1	A	448	453	Right-handed alpha
Helix 20	AC2	A	455	460	Right-handed alpha
Helix 21	AC3	B	29	31	Right-handed 310
Helix 22	AC4	B	32	39	Right-handed alpha
Helix 23	AC5	B	54	58	Right-handed 310
Helix 24	AC6	B	132	136	Right-handed 310
Helix 25	AC7	B	137	154	Right-handed alpha
Helix 26	AC8	B	165	169	Right-handed 310
Helix 27	AC9	B	183	197	Right-handed alpha
Helix 28	AD1	B	218	240	Right-handed alpha
Helix 29	AD2	B	281	285	Right-handed 310
Helix 30	AD3	B	292	300	Right-handed alpha
Helix 31	AD4	B	321	325	Right-handed 310
Helix 32	AD5	B	329	337	Right-handed alpha
Helix 33	AD6	B	354	361	Right-handed alpha
Helix 34	AD7	B	375	384	Right-handed alpha
Helix 35	AD8	B	385	390	Right-handed 310
Helix 36	AD9	B	393	397	Right-handed 310
Helix 37	AE1	B	398	418	Right-handed alpha
Helix 38	AE2	B	421	425	Right-handed 310
Helix 39	AE3	B	448	453	Right-handed alpha
Helix 40	AE4	B	455	460	Right-handed alpha
Helix 41	AE5	C	32	39	Right-handed alpha
Helix 42	AE6	C	54	58	Right-handed 310
Helix 43	AE7	C	132	136	Right-handed 310
Helix 44	AE8	C	137	154	Right-handed alpha
Helix 45	AE9	C	165	169	Right-handed 310
Helix 46	AF1	C	184	197	Right-handed alpha
Helix 47	AF2	C	219	240	Right-handed alpha
Helix 48	AF3	C	281	285	Right-handed 310
Helix 49	AF4	C	292	300	Right-handed alpha
Helix 50	AF5	C	321	325	Right-handed 310
Helix 51	AF6	C	329	337	Right-handed alpha
Helix 52	AF7	C	354	360	Right-handed alpha
Helix 53	AF8	C	375	384	Right-handed alpha
Helix 54	AF9	C	385	390	Right-handed 310
Helix 55	AG1	C	393	397	Right-handed 310
Helix 56	AG2	C	398	418	Right-handed alpha
Helix 57	AG3	C	448	453	Right-handed alpha
Helix 58	AG4	C	455	460	Right-handed alpha
Helix 59	AG5	D	29	31	Right-handed 310
Helix 60	AG6	D	32	39	Right-handed alpha
Helix 61	AG7	D	54	58	Right-handed 310
Helix 62	AG8	D	132	136	Right-handed 310
Helix 63	AG9	D	137	154	Right-handed alpha
Helix 64	AH1	D	165	169	Right-handed 310
Helix 65	AH2	D	184	197	Right-handed alpha
Helix 66	AH3	D	219	240	Right-handed alpha
Helix 67	AH4	D	281	285	Right-handed 310
Helix 68	AH5	D	292	300	Right-handed alpha
Helix 69	AH6	D	321	325	Right-handed 310
Helix 70	AH7	D	329	337	Right-handed alpha
Helix 71	AH8	D	354	360	Right-handed alpha
Helix 72	AH9	D	375	383	Right-handed alpha
Helix 73	AI1	D	384	385	Right-handed 310
Helix 74	AI2	D	386	390	Right-handed 310
Helix 75	AI3	D	393	397	Right-handed 310
Helix 76	AI4	D	398	418	Right-handed alpha
Helix 77	AI5	D	448	453	Right-handed alpha
Helix 78	AI6	D	455	460	Right-handed alpha

There are 21 sheets in PDB entry 5M8O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	A	159	162	anti-parallel
Strand 3	A	179	180	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	97	101	parallel
Strand 3	A	63	67	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	112	113	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	124	125	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	462	464	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	159	162	anti-parallel
Strand 3	B	179	180	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	67	first strand
Strand 2	B	97	101	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	112	113	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	124	125	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	462	464	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	270	first strand
Strand 2	B	273	277	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	27	first strand
Strand 2	C	155	162	anti-parallel
Strand 3	C	179	183	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	41	first strand
Strand 2	C	97	101	parallel
Strand 3	C	63	67	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	106	first strand
Strand 2	C	112	113	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	124	125	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	462	464	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	27	first strand
Strand 2	D	155	162	anti-parallel
Strand 3	D	179	183	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	97	101	parallel
Strand 3	D	63	67	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	106	first strand
Strand 2	D	112	113	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	118	first strand
Strand 2	D	124	125	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	130	first strand
Strand 2	D	462	464	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M8O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M8O