Analysis of interatomic Contacts of Structural Units in PDB entry:
5M94


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M94 entry

There are 4 chains in PDB entry 5M94 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 45PHE 445
B
 VAL 2SER 121
C
 VAL 45PHE 445
D
 VAL 2SER 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5M94. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 64Right-handed alpha
Helix 2
AA2
A
67 92Right-handed alpha
Helix 3
AA3
A
95 104Right-handed alpha
Helix 4
AA4
A
105 139Right-handed alpha
Helix 5
AA5
A
142 150Right-handed alpha
Helix 6
AA6
A
152 162Right-handed alpha
Helix 7
AA7
A
164 190Right-handed alpha
Helix 8
AA8
A
193 202Right-handed alpha
Helix 9
AA9
A
205 210Right-handed alpha
Helix 10
AB1
A
210 225Right-handed alpha
Helix 11
AB2
A
226 237Right-handed alpha
Helix 12
AB3
A
238 240Right-handed 310
Helix 13
AB4
A
246 284Right-handed alpha
Helix 14
AB5
A
293 303Right-handed alpha
Helix 15
AB6
A
309 346Right-handed alpha
Helix 16
AB7
A
351 374Right-handed alpha
Helix 17
AB8
A
377 409Right-handed alpha
Helix 18
AB9
A
409 414Right-handed alpha
Helix 19
AC1
A
419 445Right-handed alpha
Helix 20
AC2
B
86 90Right-handed 310
Helix 21
AC3
C
49 64Right-handed alpha
Helix 22
AC4
C
67 91Right-handed alpha
Helix 23
AC5
C
95 104Right-handed alpha
Helix 24
AC6
C
105 139Right-handed alpha
Helix 25
AC7
C
142 150Right-handed alpha
Helix 26
AC8
C
152 162Right-handed alpha
Helix 27
AC9
C
164 190Right-handed alpha
Helix 28
AD1
C
193 201Right-handed alpha
Helix 29
AD2
C
205 210Right-handed alpha
Helix 30
AD3
C
210 225Right-handed alpha
Helix 31
AD4
C
226 237Right-handed alpha
Helix 32
AD5
C
238 240Right-handed 310
Helix 33
AD6
C
246 284Right-handed alpha
Helix 34
AD7
C
293 303Right-handed alpha
Helix 35
AD8
C
309 346Right-handed alpha
Helix 36
AD9
C
351 374Right-handed alpha
Helix 37
AE1
C
377 409Right-handed alpha
Helix 38
AE2
C
409 414Right-handed alpha
Helix 39
AE3
C
419 445Right-handed alpha
Helix 40
AE4
D
86 90Right-handed 310
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There are 6 sheets in PDB entry 5M94. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
115 120parallel
Strand 3
B
91 100anti-parallel
Strand 4
B
30 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
57 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
115 120parallel
Strand 3
B
91 100anti-parallel
Strand 4
B
108 110anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
18 24anti-parallel
Strand 3
D
77 82anti-parallel
Strand 4
D
67 72anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
115 120parallel
Strand 3
D
91 100anti-parallel
Strand 4
D
30 39anti-parallel
Strand 5
D
46 51anti-parallel
Strand 6
D
57 59anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
115 120parallel
Strand 3
D
91 100anti-parallel
Strand 4
D
108 110anti-parallel
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