Analysis of interatomic Contacts of Structural Units in PDB entry:
5M98

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M98 entry

There are 8 chains in PDB entry 5M98 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 8	PRO 294
B	ASN 8	PRO 294
C	ASN 8	PRO 294
D	ASN 8	PRO 294
E	ASN 8	PRO 294
F	ASN 8	PRO 294
G	ASN 8	PRO 294
H	ASN 8	PRO 294

There are 48 helices in PDB entry 5M98. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	50	54	Right-handed alpha
Helix 2	2	A	63	77	Right-handed alpha
Helix 3	3	A	82	95	Right-handed alpha
Helix 4	4	A	201	217	Right-handed alpha
Helix 5	5	A	229	243	Right-handed alpha
Helix 6	6	A	265	267	Right-handed 310
Helix 7	7	B	50	54	Right-handed alpha
Helix 8	8	B	63	77	Right-handed alpha
Helix 9	9	B	82	95	Right-handed alpha
Helix 10	10	B	201	217	Right-handed alpha
Helix 11	11	B	229	243	Right-handed alpha
Helix 12	12	B	265	267	Right-handed 310
Helix 13	13	C	50	53	Right-handed alpha
Helix 14	14	C	63	77	Right-handed alpha
Helix 15	15	C	82	95	Right-handed alpha
Helix 16	16	C	201	217	Right-handed alpha
Helix 17	17	C	229	243	Right-handed alpha
Helix 18	18	C	265	267	Right-handed 310
Helix 19	19	D	50	54	Right-handed alpha
Helix 20	20	D	63	77	Right-handed alpha
Helix 21	21	D	82	95	Right-handed alpha
Helix 22	22	D	201	217	Right-handed alpha
Helix 23	23	D	229	243	Right-handed alpha
Helix 24	24	D	265	267	Right-handed 310
Helix 25	25	E	50	54	Right-handed alpha
Helix 26	26	E	63	76	Right-handed alpha
Helix 27	27	E	82	95	Right-handed alpha
Helix 28	28	E	201	217	Right-handed alpha
Helix 29	29	E	229	243	Right-handed alpha
Helix 30	30	E	265	267	Right-handed 310
Helix 31	31	F	50	54	Right-handed alpha
Helix 32	32	F	63	77	Right-handed alpha
Helix 33	33	F	82	95	Right-handed alpha
Helix 34	34	F	201	217	Right-handed alpha
Helix 35	35	F	229	243	Right-handed alpha
Helix 36	36	F	265	267	Right-handed 310
Helix 37	37	G	50	53	Right-handed alpha
Helix 38	38	G	63	77	Right-handed alpha
Helix 39	39	G	82	95	Right-handed alpha
Helix 40	40	G	201	217	Right-handed alpha
Helix 41	41	G	229	243	Right-handed alpha
Helix 42	42	G	265	267	Right-handed 310
Helix 43	43	H	50	54	Right-handed alpha
Helix 44	44	H	63	76	Right-handed alpha
Helix 45	45	H	82	95	Right-handed alpha
Helix 46	46	H	201	217	Right-handed alpha
Helix 47	47	H	229	243	Right-handed alpha
Helix 48	48	H	265	267	Right-handed 310

There are 39 sheets in PDB entry 5M98. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	38	46	anti-parallel
Strand 3	A	100	109	anti-parallel
Strand 4	A	133	141	anti-parallel
Strand 5	A	147	153	anti-parallel
Strand 6	A	188	194	anti-parallel
Strand 7	A	247	256	anti-parallel
Strand 8	A	284	291	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	29	first strand
Strand 2	A	32	40	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	126	128	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	159	first strand
Strand 2	A	184	188	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	261	first strand
Strand 2	A	276	279	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	37	46	anti-parallel
Strand 3	B	100	110	anti-parallel
Strand 4	B	133	141	anti-parallel
Strand 5	B	147	153	anti-parallel
Strand 6	B	189	194	anti-parallel
Strand 7	B	247	256	anti-parallel
Strand 8	B	284	291	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	29	first strand
Strand 2	B	32	40	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	126	128	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	159	first strand
Strand 2	B	184	188	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	261	first strand
Strand 2	B	276	279	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	37	46	anti-parallel
Strand 3	C	100	110	anti-parallel
Strand 4	C	133	141	anti-parallel
Strand 5	C	147	153	anti-parallel
Strand 6	C	188	194	anti-parallel
Strand 7	C	247	256	anti-parallel
Strand 8	C	284	291	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	29	first strand
Strand 2	C	32	40	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	114	first strand
Strand 2	C	126	128	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	159	first strand
Strand 2	C	184	188	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	276	278	anti-parallel

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There are 8 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	18	first strand
Strand 2	D	37	46	anti-parallel
Strand 3	D	100	110	anti-parallel
Strand 4	D	133	141	anti-parallel
Strand 5	D	147	153	anti-parallel
Strand 6	D	188	194	anti-parallel
Strand 7	D	247	256	anti-parallel
Strand 8	D	284	291	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	29	first strand
Strand 2	D	32	40	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	114	first strand
Strand 2	D	126	128	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	159	first strand
Strand 2	D	184	188	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	261	first strand
Strand 2	D	276	279	anti-parallel

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There are 8 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	18	first strand
Strand 2	E	37	46	anti-parallel
Strand 3	E	100	110	anti-parallel
Strand 4	E	133	141	anti-parallel
Strand 5	E	147	153	anti-parallel
Strand 6	E	188	194	anti-parallel
Strand 7	E	247	256	anti-parallel
Strand 8	E	284	291	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	28	first strand
Strand 2	E	33	40	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	114	first strand
Strand 2	E	126	128	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	159	first strand
Strand 2	E	184	188	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	258	261	first strand
Strand 2	E	276	279	anti-parallel

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There are 8 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	18	first strand
Strand 2	F	37	46	anti-parallel
Strand 3	F	100	110	anti-parallel
Strand 4	F	133	141	anti-parallel
Strand 5	F	147	153	anti-parallel
Strand 6	F	188	194	anti-parallel
Strand 7	F	247	256	anti-parallel
Strand 8	F	284	291	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	28	first strand
Strand 2	F	33	40	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	112	114	first strand
Strand 2	F	126	128	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	159	first strand
Strand 2	F	184	188	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	258	261	first strand
Strand 2	F	276	279	anti-parallel

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There are 8 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	18	first strand
Strand 2	G	38	46	anti-parallel
Strand 3	G	100	109	anti-parallel
Strand 4	G	133	141	anti-parallel
Strand 5	G	147	153	anti-parallel
Strand 6	G	188	194	anti-parallel
Strand 7	G	247	256	anti-parallel
Strand 8	G	284	291	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	29	first strand
Strand 2	G	32	40	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	155	159	first strand
Strand 2	G	184	188	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	276	278	anti-parallel

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There are 8 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	18	first strand
Strand 2	H	37	46	anti-parallel
Strand 3	H	100	110	anti-parallel
Strand 4	H	133	141	anti-parallel
Strand 5	H	147	153	anti-parallel
Strand 6	H	188	194	anti-parallel
Strand 7	H	247	256	anti-parallel
Strand 8	H	284	291	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	21	29	first strand
Strand 2	H	32	40	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	112	114	first strand
Strand 2	H	126	128	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	159	first strand
Strand 2	H	184	188	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	258	261	first strand
Strand 2	H	276	279	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M98

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M98