Analysis of interatomic Contacts of Structural Units in PDB entry:
5M99

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M99 entry

There are 2 chains in PDB entry 5M99 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 25	LYS 530
B	GLU 26	LYS 530

There are 46 helices in PDB entry 5M99. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	40	Right-handed 310
Helix 2	AA2	A	50	57	Right-handed alpha
Helix 3	AA3	A	57	65	Right-handed alpha
Helix 4	AA4	A	97	111	Right-handed alpha
Helix 5	AA5	A	128	138	Right-handed alpha
Helix 6	AA6	A	139	141	Right-handed 310
Helix 7	AA7	A	143	147	Right-handed 310
Helix 8	AA8	A	188	205	Right-handed alpha
Helix 9	AA9	A	226	245	Right-handed alpha
Helix 10	AB1	A	258	264	Right-handed alpha
Helix 11	AB2	A	271	281	Right-handed alpha
Helix 12	AB3	A	287	292	Right-handed alpha
Helix 13	AB4	A	308	318	Right-handed alpha
Helix 14	AB5	A	321	323	Right-handed 310
Helix 15	AB6	A	324	342	Right-handed alpha
Helix 16	AB7	A	351	355	Right-handed 310
Helix 17	AB8	A	367	371	Right-handed 310
Helix 18	AB9	A	388	396	Right-handed alpha
Helix 19	AC1	A	399	401	Right-handed 310
Helix 20	AC2	A	402	407	Right-handed alpha
Helix 21	AC3	A	418	423	Right-handed alpha
Helix 22	AC4	A	428	441	Right-handed alpha
Helix 23	AC5	A	443	449	Right-handed alpha
Helix 24	AC6	B	36	40	Right-handed 310
Helix 25	AC7	B	50	57	Right-handed alpha
Helix 26	AC8	B	57	65	Right-handed alpha
Helix 27	AC9	B	97	111	Right-handed alpha
Helix 28	AD1	B	128	138	Right-handed alpha
Helix 29	AD2	B	139	141	Right-handed 310
Helix 30	AD3	B	143	147	Right-handed 310
Helix 31	AD4	B	188	205	Right-handed alpha
Helix 32	AD5	B	226	245	Right-handed alpha
Helix 33	AD6	B	258	264	Right-handed alpha
Helix 34	AD7	B	271	281	Right-handed alpha
Helix 35	AD8	B	287	292	Right-handed alpha
Helix 36	AD9	B	308	317	Right-handed alpha
Helix 37	AE1	B	321	323	Right-handed 310
Helix 38	AE2	B	324	342	Right-handed alpha
Helix 39	AE3	B	351	355	Right-handed 310
Helix 40	AE4	B	367	371	Right-handed 310
Helix 41	AE5	B	388	396	Right-handed alpha
Helix 42	AE6	B	399	401	Right-handed 310
Helix 43	AE7	B	402	407	Right-handed alpha
Helix 44	AE8	B	418	423	Right-handed alpha
Helix 45	AE9	B	428	441	Right-handed alpha
Helix 46	AF1	B	443	449	Right-handed alpha

There are 12 sheets in PDB entry 5M99. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	252	first strand
Strand 2	A	209	212	parallel
Strand 3	A	114	119	parallel
Strand 4	A	68	71	parallel
Strand 5	A	32	35	parallel
Strand 6	A	346	349	parallel
Strand 7	A	299	300	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	77	first strand
Strand 2	A	85	91	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	170	174	anti-parallel
Strand 3	A	160	164	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	457	first strand
Strand 2	A	460	467	anti-parallel
Strand 3	A	470	477	anti-parallel
Strand 4	A	524	529	anti-parallel
Strand 5	A	492	499	anti-parallel
Strand 6	A	504	506	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	457	first strand
Strand 2	A	460	467	anti-parallel
Strand 3	A	470	477	anti-parallel
Strand 4	A	524	529	anti-parallel
Strand 5	A	492	499	anti-parallel
Strand 6	A	510	512	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	487	first strand
Strand 2	A	517	520	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	252	first strand
Strand 2	B	209	212	parallel
Strand 3	B	114	119	parallel
Strand 4	B	68	71	parallel
Strand 5	B	32	35	parallel
Strand 6	B	346	349	parallel
Strand 7	B	299	300	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	77	first strand
Strand 2	B	85	91	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	170	174	anti-parallel
Strand 3	B	160	164	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	457	first strand
Strand 2	B	460	466	anti-parallel
Strand 3	B	471	477	anti-parallel
Strand 4	B	524	529	anti-parallel
Strand 5	B	492	499	anti-parallel
Strand 6	B	504	506	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	457	first strand
Strand 2	B	460	466	anti-parallel
Strand 3	B	471	477	anti-parallel
Strand 4	B	524	529	anti-parallel
Strand 5	B	492	499	anti-parallel
Strand 6	B	510	512	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	487	first strand
Strand 2	B	517	520	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M99

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M99