Analysis of interatomic Contacts of Structural Units in PDB entry:
5M9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M9F entry

There are 3 chains in PDB entry 5M9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 247PRO 458
B
 SER 247PRO 458
C
 PRO 249PRO 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 5M9F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
254 256Right-handed 310
Helix 2
2
A
260 271Right-handed alpha
Helix 3
3
A
362 364Right-handed 310
Helix 4
4
B
254 256Right-handed 310
Helix 5
5
B
260 271Right-handed alpha
Helix 6
6
B
304 306Right-handed 310
Helix 7
7
B
362 364Right-handed 310
Helix 8
8
C
254 256Right-handed 310
Helix 9
9
C
260 271Right-handed alpha
Helix 10
10
C
304 306Right-handed 310
Helix 11
11
C
362 364Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 5M9F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 252first strand
Strand 2
A
276 280parallel
Strand 3
A
293 299anti-parallel
Strand 4
A
308 315anti-parallel
Strand 5
A
320 326anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 357first strand
Strand 2
A
433 441anti-parallel
Strand 3
A
419 430anti-parallel
Strand 4
A
401 409anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 394first strand
Strand 2
A
367 373anti-parallel
Strand 3
A
448 456anti-parallel
Strand 4
A
338 344anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 252first strand
Strand 2
B
275 280parallel
Strand 3
B
293 299anti-parallel
Strand 4
B
307 315anti-parallel
Strand 5
B
320 327anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 357first strand
Strand 2
B
433 441anti-parallel
Strand 3
B
419 430anti-parallel
Strand 4
B
401 409anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 394first strand
Strand 2
B
367 373anti-parallel
Strand 3
B
448 456anti-parallel
Strand 4
B
338 344anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
250 252first strand
Strand 2
C
275 280parallel
Strand 3
C
293 299anti-parallel
Strand 4
C
309 315anti-parallel
Strand 5
C
320 325anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
354 357first strand
Strand 2
C
433 440anti-parallel
Strand 3
C
419 430anti-parallel
Strand 4
C
401 409anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
388 394first strand
Strand 2
C
367 373anti-parallel
Strand 3
C
448 456anti-parallel
Strand 4
C
338 344anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il