Analysis of interatomic Contacts of Structural Units in PDB entry:
5M9N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M9N entry

There are 4 chains in PDB entry 5M9N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 474GLU 675
B
 ASN 473ALA 672
C
 GLY 7GLY 7
C
 GLY 9GLY 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5M9N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
478 482Right-handed 310
Helix 2
AA2
A
515 532Right-handed alpha
Helix 3
AA3
A
593 598Right-handed 310
Helix 4
AA4
A
619 631Right-handed alpha
Helix 5
AA5
A
662 669Right-handed alpha
Helix 6
AA6
B
478 482Right-handed 310
Helix 7
AA7
B
514 533Right-handed alpha
Helix 8
AA8
B
593 598Right-handed 310
Helix 9
AA9
B
619 631Right-handed alpha
Helix 10
AB1
B
662 669Right-handed alpha
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There are 5 sheets in PDB entry 5M9N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
660 661first strand
Strand 2
A
647 653anti-parallel
Strand 3
A
635 642anti-parallel
Strand 4
A
494 504anti-parallel
Strand 5
A
507 512anti-parallel
Strand 6
A
604 608anti-parallel
Strand 7
A
647 653parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 585first strand
Strand 2
A
570 575anti-parallel
Strand 3
A
557 567anti-parallel
Strand 4
A
546 550anti-parallel
Strand 5
A
589 590anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 613first strand
Strand 2
A
672 674anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
660 661first strand
Strand 2
B
647 653anti-parallel
Strand 3
B
635 642anti-parallel
Strand 4
B
494 504anti-parallel
Strand 5
B
507 512anti-parallel
Strand 6
B
604 608anti-parallel
Strand 7
B
647 653parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
581 585first strand
Strand 2
B
570 575anti-parallel
Strand 3
B
557 567anti-parallel
Strand 4
B
546 550anti-parallel
Strand 5
B
589 590anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il