Analysis of interatomic Contacts of Structural Units in PDB entry:
5MA1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MA1 entry

There are 2 chains in PDB entry 5MA1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 14LYS 462
B
 ILE 10VAL 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 5MA1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 36Right-handed 310
Helix 2
AA2
A
56 70Right-handed alpha
Helix 3
AA3
A
81 96Right-handed alpha
Helix 4
AA4
A
97 99Right-handed 310
Helix 5
AA5
A
119 125Right-handed alpha
Helix 6
AA6
A
126 129Right-handed 310
Helix 7
AA7
A
139 154Right-handed alpha
Helix 8
AA8
A
165 169Right-handed 310
Helix 9
AA9
A
181 189Right-handed 310
Helix 10
AB1
A
226 231Right-handed alpha
Helix 11
AB2
A
235 263Right-handed alpha
Helix 12
AB3
A
276 284Right-handed alpha
Helix 13
AB4
A
324 333Right-handed alpha
Helix 14
AB5
A
333 339Right-handed alpha
Helix 15
AB6
A
368 380Right-handed alpha
Helix 16
AB7
A
384 390Right-handed alpha
Helix 17
AB8
A
432 437Right-handed alpha
Helix 18
AB9
A
441 445Right-handed 310
Helix 19
AC1
A
446 451Right-handed alpha
Helix 20
AC2
A
452 454Right-handed 310
Helix 21
AC3
A
456 461Right-handed alpha
Helix 22
AC4
B
32 36Right-handed 310
Helix 23
AC5
B
56 70Right-handed alpha
Helix 24
AC6
B
81 96Right-handed alpha
Helix 25
AC7
B
97 99Right-handed 310
Helix 26
AC8
B
119 126Right-handed alpha
Helix 27
AC9
B
127 129Right-handed 310
Helix 28
AD1
B
139 154Right-handed alpha
Helix 29
AD2
B
165 169Right-handed 310
Helix 30
AD3
B
181 188Right-handed 310
Helix 31
AD4
B
226 231Right-handed alpha
Helix 32
AD5
B
235 263Right-handed alpha
Helix 33
AD6
B
276 284Right-handed alpha
Helix 34
AD7
B
324 333Right-handed alpha
Helix 35
AD8
B
333 339Right-handed alpha
Helix 36
AD9
B
368 380Right-handed alpha
Helix 37
AE1
B
384 390Right-handed alpha
Helix 38
AE2
B
432 438Right-handed alpha
Helix 39
AE3
B
441 445Right-handed 310
Helix 40
AE4
B
446 451Right-handed alpha
Helix 41
AE5
B
452 454Right-handed 310
Helix 42
AE6
B
456 461Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 5MA1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
53 55anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
77 78anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 163first strand
Strand 2
A
217 224anti-parallel
Strand 3
A
304 311anti-parallel
Strand 4
A
267 268anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
190 197anti-parallel
Strand 3
A
209 212parallel
Strand 4
A
203 204anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
295 296anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
53 55anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
77 78anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 163first strand
Strand 2
B
217 224anti-parallel
Strand 3
B
304 311anti-parallel
Strand 4
B
267 268anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 175first strand
Strand 2
B
190 197anti-parallel
Strand 3
B
209 212parallel
Strand 4
B
203 204anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 289first strand
Strand 2
B
295 296anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il