Analysis of interatomic Contacts of Structural Units in PDB entry:
5MAK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MAK entry

There are 5 chains in PDB entry 5MAK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 2LEU 64
B
 VAL 68LEU 231
A
 ASP 13ALA 305
D
 SER 2LEU 64
D
 VAL 68LEU 141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 5MAK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
3 9Right-handed 310
Helix 2
AA2
B
56 61Right-handed 310
Helix 3
AA3
B
68 72Right-handed 310
Helix 4
AA4
B
75 81Right-handed 310
Helix 5
AA5
B
82 87Right-handed alpha
Helix 6
AA6
A
14 25Right-handed alpha
Helix 7
AA7
A
26 36Right-handed alpha
Helix 8
AA8
A
49 57Right-handed alpha
Helix 9
AA9
A
59 69Right-handed alpha
Helix 10
AB1
A
82 91Right-handed alpha
Helix 11
AB2
A
92 102Right-handed alpha
Helix 12
AB3
A
115 124Right-handed alpha
Helix 13
AB4
A
125 135Right-handed alpha
Helix 14
AB5
A
148 156Right-handed alpha
Helix 15
AB6
A
158 169Right-handed alpha
Helix 16
AB7
A
187 193Right-handed alpha
Helix 17
AB8
A
196 206Right-handed alpha
Helix 18
AB9
A
219 228Right-handed alpha
Helix 19
AC1
A
229 239Right-handed alpha
Helix 20
AC2
A
252 260Right-handed alpha
Helix 21
AC3
A
262 272Right-handed alpha
Helix 22
AC4
A
285 293Right-handed alpha
Helix 23
AC5
A
295 304Right-handed alpha
Helix 24
AC6
D
3 9Right-handed 310
Helix 25
AC7
D
56 61Right-handed 310
Helix 26
AC8
D
68 72Right-handed 310
Helix 27
AC9
D
75 81Right-handed 310
Helix 28
AD1
D
82 87Right-handed alpha
Helix 29
AD2
C
14 25Right-handed alpha
Helix 30
AD3
C
26 36Right-handed alpha
Helix 31
AD4
C
49 57Right-handed alpha
Helix 32
AD5
C
59 69Right-handed alpha
Helix 33
AD6
C
82 91Right-handed alpha
Helix 34
AD7
C
92 102Right-handed alpha
Helix 35
AD8
C
115 124Right-handed alpha
Helix 36
AD9
C
125 135Right-handed alpha
Helix 37
AE1
C
148 156Right-handed alpha
Helix 38
AE2
C
158 169Right-handed alpha
Helix 39
AE3
C
187 193Right-handed alpha
Helix 40
AE4
C
196 206Right-handed alpha
Helix 41
AE5
C
219 228Right-handed alpha
Helix 42
AE6
C
229 239Right-handed alpha
Helix 43
AE7
C
252 260Right-handed alpha
Helix 44
AE8
C
262 272Right-handed alpha
Helix 45
AE9
C
285 293Right-handed alpha
Helix 46
AF1
C
295 305Right-handed alpha
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There are 2 sheets in PDB entry 5MAK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 22first strand
Strand 2
B
25 36anti-parallel
Strand 3
B
41 48anti-parallel
Strand 4
B
217 227anti-parallel
Strand 5
B
199 208anti-parallel
Strand 6
B
149 154anti-parallel
Strand 7
B
161 170anti-parallel
Strand 8
B
176 187anti-parallel
Strand 9
B
92 100anti-parallel
Strand 10
B
105 115anti-parallel
Strand 11
B
118 128anti-parallel
Strand 12
B
11 22parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 22first strand
Strand 2
D
25 36anti-parallel
Strand 3
D
41 48anti-parallel
Strand 4
D
217 227anti-parallel
Strand 5
D
199 208anti-parallel
Strand 6
D
149 155anti-parallel
Strand 7
D
160 170anti-parallel
Strand 8
D
176 187anti-parallel
Strand 9
D
92 100anti-parallel
Strand 10
D
105 115anti-parallel
Strand 11
D
118 128anti-parallel
Strand 12
D
11 22parallel
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