Analysis of interatomic Contacts of Structural Units in PDB entry:
5MAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MAP entry

There are 2 chains in PDB entry 5MAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 70GLU 444
B
 ALA 69GLU 444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5MAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 78Right-handed alpha
Helix 2
AA2
A
110 130Right-handed alpha
Helix 3
AA3
A
158 164Right-handed alpha
Helix 4
AA4
A
166 170Right-handed 310
Helix 5
AA5
A
171 175Right-handed 310
Helix 6
AA6
A
186 190Right-handed 310
Helix 7
AA7
A
202 218Right-handed alpha
Helix 8
AA8
A
262 268Right-handed alpha
Helix 9
AA9
A
280 284Right-handed 310
Helix 10
AB1
A
297 302Right-handed alpha
Helix 11
AB2
A
305 314Right-handed alpha
Helix 12
AB3
A
352 357Right-handed alpha
Helix 13
AB4
A
358 362Right-handed 310
Helix 14
AB5
A
396 399Right-handed 310
Helix 15
AB6
A
400 412Right-handed alpha
Helix 16
AB7
A
413 416Right-handed 310
Helix 17
AB8
A
439 444Right-handed alpha
Helix 18
AB9
B
73 78Right-handed alpha
Helix 19
AC1
B
110 130Right-handed alpha
Helix 20
AC2
B
159 164Right-handed alpha
Helix 21
AC3
B
166 170Right-handed 310
Helix 22
AC4
B
171 175Right-handed 310
Helix 23
AC5
B
202 218Right-handed alpha
Helix 24
AC6
B
262 268Right-handed alpha
Helix 25
AC7
B
280 284Right-handed 310
Helix 26
AC8
B
297 302Right-handed alpha
Helix 27
AC9
B
305 314Right-handed alpha
Helix 28
AD1
B
352 357Right-handed alpha
Helix 29
AD2
B
358 362Right-handed 310
Helix 30
AD3
B
396 399Right-handed 310
Helix 31
AD4
B
400 412Right-handed alpha
Helix 32
AD5
B
413 416Right-handed 310
Helix 33
AD6
B
439 444Right-handed alpha
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There are 4 sheets in PDB entry 5MAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
A
384 394anti-parallel
Strand 3
A
372 378anti-parallel
Strand 4
A
221 230anti-parallel
Strand 5
A
97 105anti-parallel
Strand 6
A
194 200anti-parallel
Strand 7
A
151 157anti-parallel
Strand 8
A
418 428anti-parallel
Strand 9
A
287 296anti-parallel
Strand 10
A
384 394anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 156first strand
Strand 2
B
194 200anti-parallel
Strand 3
B
97 105anti-parallel
Strand 4
B
221 230anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 369first strand
Strand 2
B
384 394anti-parallel
Strand 3
B
372 378anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 369first strand
Strand 2
B
384 394anti-parallel
Strand 3
B
287 296anti-parallel
Strand 4
B
418 428anti-parallel
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