Analysis of interatomic Contacts of Structural Units in PDB entry:
5MAV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MAV entry

There are 12 chains in PDB entry 5MAV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -2	ILE 255
C	MET 1	ILE 255
E	MET 1	ILE 255
B	GLY -2	ILE 255
D	GLU 3	ILE 255
F	MET 1	ILE 255
G	LYS 406	LYS 419
H	LYS 406	PRO 418
K	LYS 406	LEU 417
L	LYS 406	ARG 416
N	LYS 406	MET 415
M	LYS 406	LEU 417

There are 40 helices in PDB entry 5MAV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	21	Right-handed alpha
Helix 2	AA2	A	55	57	Right-handed 310
Helix 3	AA3	A	72	81	Right-handed alpha
Helix 4	AA4	A	141	155	Right-handed alpha
Helix 5	AA5	A	209	216	Right-handed alpha
Helix 6	AA6	A	217	222	Right-handed 310
Helix 7	AA7	C	9	18	Right-handed alpha
Helix 8	AA8	C	55	57	Right-handed 310
Helix 9	AA9	C	72	81	Right-handed alpha
Helix 10	AB1	C	141	155	Right-handed alpha
Helix 11	AB2	C	209	216	Right-handed alpha
Helix 12	AB3	C	217	222	Right-handed 310
Helix 13	AB4	E	9	21	Right-handed alpha
Helix 14	AB5	E	72	81	Right-handed alpha
Helix 15	AB6	E	141	152	Right-handed alpha
Helix 16	AB7	E	209	216	Right-handed alpha
Helix 17	AB8	E	217	222	Right-handed 310
Helix 18	AB9	B	9	21	Right-handed alpha
Helix 19	AC1	B	55	57	Right-handed 310
Helix 20	AC2	B	72	81	Right-handed alpha
Helix 21	AC3	B	141	155	Right-handed alpha
Helix 22	AC4	B	209	216	Right-handed alpha
Helix 23	AC5	B	217	222	Right-handed 310
Helix 24	AC6	D	9	21	Right-handed alpha
Helix 25	AC7	D	55	57	Right-handed 310
Helix 26	AC8	D	72	80	Right-handed alpha
Helix 27	AC9	D	141	155	Right-handed alpha
Helix 28	AD1	D	209	216	Right-handed alpha
Helix 29	AD2	D	217	222	Right-handed 310
Helix 30	AD3	F	9	20	Right-handed alpha
Helix 31	AD4	F	55	57	Right-handed 310
Helix 32	AD5	F	72	81	Right-handed alpha
Helix 33	AD6	F	141	153	Right-handed alpha
Helix 34	AD7	F	208	216	Right-handed alpha
Helix 35	AD8	F	217	222	Right-handed 310
Helix 36	AD9	G	409	413	Right-handed 310
Helix 37	AE1	H	409	413	Right-handed 310
Helix 38	AE2	K	409	413	Right-handed 310
Helix 39	AE3	N	409	413	Right-handed 310
Helix 40	AE4	M	409	413	Right-handed 310

There are 15 sheets in PDB entry 5MAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	2	6	anti-parallel
Strand 3	A	87	92	anti-parallel
Strand 4	A	98	104	anti-parallel
Strand 5	A	110	117	anti-parallel
Strand 6	C	176	183	anti-parallel
Strand 7	C	166	173	anti-parallel
Strand 8	C	157	162	anti-parallel
Strand 9	C	203	208	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	71	first strand
Strand 2	A	25	31	anti-parallel
Strand 3	A	34	40	anti-parallel
Strand 4	A	46	53	anti-parallel
Strand 5	A	245	251	anti-parallel
Strand 6	A	235	241	anti-parallel
Strand 7	A	224	229	anti-parallel
Strand 8	A	135	140	anti-parallel
Strand 9	A	196	199	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	H	415	416	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	208	first strand
Strand 2	A	157	162	anti-parallel
Strand 3	A	166	173	anti-parallel
Strand 4	A	176	183	anti-parallel
Strand 5	E	111	117	anti-parallel
Strand 6	E	98	104	anti-parallel
Strand 7	E	87	92	anti-parallel
Strand 8	E	2	6	anti-parallel
Strand 9	E	59	62	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	62	first strand
Strand 2	C	2	6	anti-parallel
Strand 3	C	87	92	anti-parallel
Strand 4	C	98	104	anti-parallel
Strand 5	C	110	117	anti-parallel
Strand 6	E	176	183	anti-parallel
Strand 7	E	166	173	anti-parallel
Strand 8	E	157	163	anti-parallel
Strand 9	E	203	208	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	C	25	30	anti-parallel
Strand 3	C	34	40	anti-parallel
Strand 4	C	46	53	anti-parallel
Strand 5	C	245	251	anti-parallel
Strand 6	C	235	241	anti-parallel
Strand 7	C	224	229	anti-parallel
Strand 8	C	135	140	anti-parallel
Strand 9	C	196	199	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	71	first strand
Strand 2	E	25	30	anti-parallel
Strand 3	E	34	40	anti-parallel
Strand 4	E	46	53	anti-parallel
Strand 5	E	245	251	anti-parallel
Strand 6	E	235	241	anti-parallel
Strand 7	E	224	229	anti-parallel
Strand 8	E	135	140	anti-parallel
Strand 9	E	196	199	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	87	92	anti-parallel
Strand 4	B	98	104	anti-parallel
Strand 5	B	110	117	anti-parallel
Strand 6	D	176	183	anti-parallel
Strand 7	D	166	173	anti-parallel
Strand 8	D	157	162	anti-parallel
Strand 9	D	203	208	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	30	first strand
Strand 2	B	66	71	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	46	53	anti-parallel
Strand 3	B	38	40	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	46	53	anti-parallel
Strand 3	B	245	251	anti-parallel
Strand 4	B	235	241	anti-parallel
Strand 5	B	224	229	anti-parallel
Strand 6	B	135	140	anti-parallel
Strand 7	B	196	199	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	208	first strand
Strand 2	B	157	162	anti-parallel
Strand 3	B	166	173	anti-parallel
Strand 4	B	176	183	anti-parallel
Strand 5	F	110	117	anti-parallel
Strand 6	F	98	104	anti-parallel
Strand 7	F	87	92	anti-parallel
Strand 8	F	2	6	anti-parallel
Strand 9	F	59	62	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	4	6	anti-parallel
Strand 3	D	87	91	anti-parallel
Strand 4	D	99	104	anti-parallel
Strand 5	D	110	116	anti-parallel
Strand 6	F	176	183	anti-parallel
Strand 7	F	166	172	anti-parallel
Strand 8	F	158	163	anti-parallel
Strand 9	F	203	207	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	71	first strand
Strand 2	D	25	30	anti-parallel
Strand 3	D	34	39	anti-parallel
Strand 4	D	46	53	anti-parallel
Strand 5	D	245	251	anti-parallel
Strand 6	D	235	241	anti-parallel
Strand 7	D	224	229	anti-parallel
Strand 8	D	135	140	anti-parallel
Strand 9	D	196	199	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	25	31	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	46	53	anti-parallel
Strand 5	F	245	251	anti-parallel
Strand 6	F	233	241	anti-parallel
Strand 7	F	224	230	anti-parallel
Strand 8	F	135	140	anti-parallel
Strand 9	F	196	199	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MAV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MAV