Analysis of interatomic Contacts of Structural Units in PDB entry:
5MB9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MB9 entry

There are 4 chains in PDB entry 5MB9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 11	VAL 566
B	GLU 12	VAL 566
C	LEU 29	ARG 57
D	ASP 22	LYS 56

There are 37 helices in PDB entry 5MB9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	67	Right-handed alpha
Helix 2	AA2	A	79	83	Right-handed 310
Helix 3	AA3	A	93	97	Right-handed 310
Helix 4	AA4	A	127	147	Right-handed alpha
Helix 5	AA5	A	162	176	Right-handed alpha
Helix 6	AA6	A	186	196	Right-handed alpha
Helix 7	AA7	A	241	261	Right-handed alpha
Helix 8	AA8	A	266	269	Right-handed 310
Helix 9	AA9	A	270	291	Right-handed alpha
Helix 10	AB1	A	313	320	Right-handed alpha
Helix 11	AB2	A	320	338	Right-handed alpha
Helix 12	AB3	A	341	345	Right-handed 310
Helix 13	AB4	A	352	356	Right-handed 310
Helix 14	AB5	A	357	368	Right-handed alpha
Helix 15	AB6	A	388	402	Right-handed alpha
Helix 16	AB7	A	405	420	Right-handed alpha
Helix 17	AB8	B	61	67	Right-handed alpha
Helix 18	AB9	B	79	83	Right-handed 310
Helix 19	AC1	B	86	90	Right-handed 310
Helix 20	AC2	B	93	97	Right-handed 310
Helix 21	AC3	B	127	147	Right-handed alpha
Helix 22	AC4	B	162	176	Right-handed alpha
Helix 23	AC5	B	186	196	Right-handed alpha
Helix 24	AC6	B	241	261	Right-handed alpha
Helix 25	AC7	B	266	269	Right-handed 310
Helix 26	AC8	B	270	291	Right-handed alpha
Helix 27	AC9	B	313	320	Right-handed alpha
Helix 28	AD1	B	320	338	Right-handed alpha
Helix 29	AD2	B	341	345	Right-handed 310
Helix 30	AD3	B	352	356	Right-handed 310
Helix 31	AD4	B	357	368	Right-handed alpha
Helix 32	AD5	B	388	402	Right-handed alpha
Helix 33	AD6	B	405	420	Right-handed alpha
Helix 34	AD7	C	30	32	Right-handed 310
Helix 35	AD8	C	43	57	Right-handed alpha
Helix 36	AD9	D	30	32	Right-handed 310
Helix 37	AE1	D	43	56	Right-handed alpha

There are 18 sheets in PDB entry 5MB9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	24	30	anti-parallel
Strand 3	A	47	48	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	24	30	anti-parallel
Strand 3	A	15	20	anti-parallel
Strand 4	A	152	157	parallel
Strand 5	A	179	185	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	50	54	anti-parallel
Strand 3	A	75	77	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	104	first strand
Strand 2	A	107	112	anti-parallel
Strand 3	A	123	126	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	237	first strand
Strand 2	A	217	225	anti-parallel
Strand 3	A	205	212	anti-parallel
Strand 4	A	347	351	parallel
Strand 5	A	373	375	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	302	first strand
Strand 2	A	305	312	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	423	first strand
Strand 2	D	34	36	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	429	first strand
Strand 2	A	467	479	anti-parallel
Strand 3	A	524	538	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	456	first strand
Strand 2	A	549	553	anti-parallel
Strand 3	A	558	563	anti-parallel
Strand 4	D	24	28	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	24	31	anti-parallel
Strand 3	B	47	48	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	24	31	anti-parallel
Strand 3	B	15	20	anti-parallel
Strand 4	B	152	157	parallel
Strand 5	B	179	185	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	50	54	anti-parallel
Strand 3	B	75	77	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	104	first strand
Strand 2	B	107	112	anti-parallel
Strand 3	B	123	126	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	237	first strand
Strand 2	B	217	225	anti-parallel
Strand 3	B	205	212	anti-parallel
Strand 4	B	347	351	parallel
Strand 5	B	373	375	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	302	first strand
Strand 2	B	305	312	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	423	first strand
Strand 2	C	34	36	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	444	first strand
Strand 2	B	426	429	anti-parallel
Strand 3	B	471	478	anti-parallel
Strand 4	B	525	532	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	456	first strand
Strand 2	B	547	553	anti-parallel
Strand 3	B	559	565	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MB9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MB9