Analysis of interatomic Contacts of Structural Units in PDB entry:
5MBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MBB entry

There are 2 chains in PDB entry 5MBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 347
B
 MET 1GLU 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5MBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 35Right-handed alpha
Helix 2
AA2
A
55 67Right-handed alpha
Helix 3
AA3
A
106 125Right-handed alpha
Helix 4
AA4
A
128 137Right-handed alpha
Helix 5
AA5
A
140 144Right-handed 310
Helix 6
AA6
A
160 168Right-handed alpha
Helix 7
AA7
A
169 191Right-handed alpha
Helix 8
AA8
A
211 233Right-handed alpha
Helix 9
AA9
A
237 242Right-handed 310
Helix 10
AB1
A
270 283Right-handed alpha
Helix 11
AB2
A
284 286Right-handed 310
Helix 12
AB3
A
293 298Right-handed alpha
Helix 13
AB4
A
328 330Right-handed 310
Helix 14
AB5
A
334 346Right-handed alpha
Helix 15
AB6
B
18 34Right-handed alpha
Helix 16
AB7
B
54 67Right-handed alpha
Helix 17
AB8
B
99 101Right-handed 310
Helix 18
AB9
B
105 127Right-handed alpha
Helix 19
AC1
B
128 137Right-handed alpha
Helix 20
AC2
B
140 144Right-handed 310
Helix 21
AC3
B
160 168Right-handed alpha
Helix 22
AC4
B
169 191Right-handed alpha
Helix 23
AC5
B
211 233Right-handed alpha
Helix 24
AC6
B
237 242Right-handed 310
Helix 25
AC7
B
270 283Right-handed alpha
Helix 26
AC8
B
284 286Right-handed 310
Helix 27
AC9
B
294 298Right-handed alpha
Helix 28
AD1
B
328 330Right-handed 310
Helix 29
AD2
B
334 347Right-handed alpha
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There are 7 sheets in PDB entry 5MBB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 81first strand
Strand 2
A
2 10anti-parallel
Strand 3
A
46 54anti-parallel
Strand 4
A
37 42anti-parallel
Strand 5
A
94 97parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 199first strand
Strand 2
A
202 208anti-parallel
Strand 3
A
147 158anti-parallel
Strand 4
A
244 259anti-parallel
Strand 5
A
264 269anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 199first strand
Strand 2
A
202 208anti-parallel
Strand 3
A
147 158anti-parallel
Strand 4
A
244 259anti-parallel
Strand 5
A
290 292parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 312first strand
Strand 2
A
321 326anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 83first strand
Strand 2
B
2 11anti-parallel
Strand 3
B
46 53anti-parallel
Strand 4
B
37 42anti-parallel
Strand 5
B
94 97parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 199first strand
Strand 2
B
202 208anti-parallel
Strand 3
B
147 158anti-parallel
Strand 4
B
244 259anti-parallel
Strand 5
B
264 269anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 199first strand
Strand 2
B
202 208anti-parallel
Strand 3
B
147 158anti-parallel
Strand 4
B
244 259anti-parallel
Strand 5
B
290 293parallel
Strand 6
B
321 326anti-parallel
Strand 7
B
306 312anti-parallel
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